Slobodan Beronja, Ph.D.

FACULTY MEMBER

Slobodan Beronja, Ph.D.

Associate Member
Human Biology Division, Fred Hutch

Fax: 206.667.2917
Mail Stop: D4-100

Dr. Slobodan Beronja studies how our skin develops to better understand skin cancer, including squamous cell carcinoma. Because we constantly shed the uppermost layer of our skin, we rely on specialized skin stem cells to form new skin cells to replace those lost. To maintain a pool of skin-replenishing stem cells, stem cells also continually renew themselves. Dr. Beronja studies how skin stem cells perform both functions — and how skin tumors can co-opt those normal processes. He also uncovers the strategies that skin employs to prevent the development of cancer.

Education

University of Toronto, 2006, Ph.D.

University of Toronto, 2000, B.S., Zoology

Research Interests

Dr. Beronja's laboratory studies molecular and cellular mechanisms that are essential for tissue growth during development and tumorigenesis. His goal is to identifying genes and gene pathways that can be used as targets in cancer therapy with a particular focus on the regulators of the balance between stem cell renewal and differentiation.

Dr. Beronja's research uses mouse skin epidermis and epidermal squamous cell carcinoma (SCC) as a model of tissue growth in development and disease. Skin epidermis is a particularly suitable system for our investigation for the following reasons:

Well-defined physiological system: Skin is composed of two compartments, the epithelial epidermis and mesenchymal dermis, separated by a basement membrane. Epidermal growth during embryonic development and its maintenance in the adult are achieved through continuous cycles of progenitor cell self-renewal and differentiation under the control of cell extrinsic signals coming from the surrounding mesenchyme.

Implications for human health: SCC of the skin is the second most common cancer in people, with an estimated 700,000 new cases in the US each year. Fortunately, most lesions are detected early and surgically removed, accounting for disease’s high survival rates. Importantly, ontogeny of epidermal SCC parallels cancers associated with high mortality, including the SCC of the head and neck and the lung SCC.

Tools for analysis of gene function: In addition to standard methods of creating transgenic animals, mouse epidermis can be efficiently and stably targeted through in utero injection of lentivirus. Using lentivirus to express shRNA, for RNAi-mediated gene knockdown, or ORF, for gene overexpression, we can rapidly assess gene function and complex genetic interactions in skin morphogenesis and disease in vivo.

Research efforts in the lab will be divided between several approaches:

1. Candidate-based analysis of gene function in regulation of epidermal tissue growth. We have completed an RNAi screen of ~16,000 mouse genes and uncovered putative regulators of epidermal tissue growth during embryonic development and oncogenic hyperplasia. We will now probe the precise cellular and molecular mechanisms behind the observed growth effects, with a focus on genes that specifically operate within the physiological environment by altering the balance between stem cell renewal and differentiation.

2. Large-scale investigation of modifiers of epidermal tumor initiation. We have been successful in combining the pooled-format lentiviral-mediated RNAi and quantitative Illumina sequencing into a rapid, comprehensive, and relatively low-cost approach to genome-wide gene function analysis during embryogenesis. Next, we are extending the use of the approach to postnatal epidermis, to indentify bona fide enhancers of tumor initiation and progression in the oncogenic Ras animal model. The complexity of our lentiviral pools will vary from patient-specific to genome-wide.

3. Development of a general model of epithelial growth and tumorigenesis. Small modifications in the in utero injection method result in efficient lentiviral transduction of other tissues, including the oral, mammary and airway epithelium. These are distinct from the epidermis in their organization, physiological environment, and rate of developmental and regenerative growth, and carcinomas in these epithelia are the leading cause of tumor-associated deaths worldwide. Using RNAi-mediated gene knockdown we will test general applicability of molecular mechanisms uncovered in our studies of epidermal growth and tumorigenesis.

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