Vaccine and Infectious Disease Division

Recent Publications

Print outs of scientific publications

2015

VIDD Publications Archive

Current

Andrasik MP, Clad R, Bove J, Tsegaselassie S, Morris M. (2015). A Preliminary Evaluation of a Community-Based Campaign to Increase Awareness of Concurrency and HIV Transmission in African American and African-Born Communities. AIDS Behav.
Full-text Article:  http://scholars.fhcrc.org/6553/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25711296?otool=fhcrclib

Artimovich E, Schneider K, Taylor TE, Kublin JG, Dzinjalamala FK, Escalante AA, Plowe CV, Laufer MK, Takala-Harrison S. (2015). Persistence of sulfadoxine-pyrimethamine resistance despite reduction of drug pressure in Malawi. J Infect Dis.
Full-text Article:  http://scholars.fhcrc.org/6451/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25672905?otool=fhcrclib

Casper C, Van Agthoven M, Rothman M, Fleming S, Ho KF, Qi M, Vermeulen J, Cavet J. (2014). The Multicentric Castleman's Disease (Mcd) -Symptom Scale (Mcd-Ss): Development and Validation of a Patient-Reported Outcome (Pro) Measure for an Ultra-Orphan Disease. Value in Health, 17(7), A535-A.
Full-text Article:  http://scholars.fhcrc.org/6591/
PubMed Record: No PubMed record available.

Cohen KW, Dugast A-S, Alter G, McElrath MJ, Stamatatos L. (2015). HIV-1 Single-Stranded RNA Induces CXCL13 Secretion in Human Monocytes via TLR7 Activation and Plasmacytoid Dendritic Cell-Derived Type I IFN. Journal of immunology.
Full-text Article:  http://scholars.fhcrc.org/6422/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25667414?otool=fhcrclib

Dahlberg A, Woo S, Delaney C, Boyle P, Gnirke A, Bock C, Bernstein BE, Meissner A, Gottardo R, Bernstein ID. (2015). Notch-mediated expansion of cord blood progenitors: maintenance of transcriptional and epigenetic fidelity. Leukemia.
Full-text Article:  http://scholars.fhcrc.org/6568/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25742749?otool=fhcrclib

Dai JY, Zhang XC. (2015). Mendelian Randomization Studies for a Continuous Exposure Under Case-Control Sampling. Am J Epidemiol.
Full-text Article:  http://scholars.fhcrc.org/6552/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25713335?otool=fhcrclib

Fleming TR. (2015). Response to Nissen, London, and Chuang-Stein et al. Clinical trials, 12(1), 21-3.
Full-text Article:  http://scholars.fhcrc.org/6515/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25721147?otool=fhcrclib

Gantt S, Gachelet E, Carlsson J, Barcy S, Casper C, Lagunoff M. (2015). Nelfinavir impairs glycosylation of herpes simplex virus 1 envelope proteins and blocks virus maturation. Advances in virology, 2015, 687162. PMCID: PMC4325974.
Full-text Article:  http://scholars.fhcrc.org/6544/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25709648?otool=fhcrclib

Greer AC, Molina Y, Wandell G, Sanchez H, Bain C, Konda K, Villaran M, Lama J, Duerr A. (2015). Effect of Coping Style on Linkage to Care and Mental Health among Newly Diagnosed Hiv-Infected Men Who Have Sex with Men and Transgender Women in Lima, Peru. J Invest Med, 63(1), 96-7.
Full-text Article:  http://scholars.fhcrc.org/6502/
PubMed Record: No PubMed record available.

Hancock G, Yang H, Yorke E, Wainwright E, Bourne V, Frisbee A, Payne TL, Berrong M, Ferrari G, Chopera D, Hanke T, Mothe B, Brander C, McElrath MJ, McMichael A, Goonetilleke N, Tomaras GD, Frahm N, Dorrell L. (2015). Identification of Effective Subdominant Anti-HIV-1 CD8+ T Cells Within Entire Post-infection and Post-vaccination Immune Responses. PLoS Pathog, 11(2), e1004658. PMCID: PMC4344337.
Full-text Article:  http://scholars.fhcrc.org/6516/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25723536?otool=fhcrclib

Irvin R, Vallabhaneni S, Scott H, Williams JK, Wilton L, Li X, Buchbinder S, 061 H. (2015). Examining Levels of Risk Behaviors among Black Men Who Have Sex with Men (MSM) and the Association with HIV Acquisition. PLoS One, 10(2), e0118281.
Full-text Article:  http://scholars.fhcrc.org/6474/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25688980?otool=fhcrclib

Koblin BA, Grant S, Frye V, Superak H, Sanchez B, Lucy D, Dunbar D, Graham P, Madenwald T, Escamilia G, Swann E, Morgan C, Novak RM, Frank I, on behalf of the Hst. (2015). HIV Sexual Risk and Syndemics among Women in Three Urban Areas in the United States: Analysis from HVTN 906. J Urban Health.
Full-text Article:  http://scholars.fhcrc.org/6567/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25743100?otool=fhcrclib

Mayer BT, Srinivasan S, Fiedler TL, Marrazzo JM, Fredricks DN, Schiffer JT. (2015). Rapid and profound shifts in the vaginal microbiota following antibiotic treatment for bacterial vaginosis. J Infect Dis.
Full-text Article:  http://scholars.fhcrc.org/6436/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25676470?otool=fhcrclib

Mgodi NM, Kelly C, Gati B, Greenspan S, Dai JY, Bragg V, Livant E, Piper JM, Nakabiito C, Magure T, Marrazzo JM, Chirenje ZM, Riddler SA. (2015). Factors associated with bone mineral density in healthy African women. Archives of osteoporosis, 10(1), 206.
Full-text Article:  http://scholars.fhcrc.org/6449/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25680424?otool=fhcrclib

Mielcarek M, Furlong T, Storer BE, Green ML, McDonald GB, Carpenter PA, Flowers MED, Storb R, Boeckh M, Martin PJ. (2015). Effectiveness and safety of lower-dose prednisone for initial treatment of acute graft-versus-host disease: a randomized controlled trial. Haematologica.
Full-text Article:  http://scholars.fhcrc.org/6435/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25682602?otool=fhcrclib

Podczervinski S, Stednick Z, Helbert L, Davies J, Jagels B, Gooley T, Casper C, Pergam SA. (2015). Employee influenza vaccination in a large cancer center with high baseline compliance rates: Comparison of carrot versus stick approaches. American journal of infection control, 43(3), 228-33.
Full-text Article:  http://scholars.fhcrc.org/6587/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25728148?otool=fhcrclib

Rajagopal S, Magaret A, Mugo N, Wald A. (2014). Incidence of herpes simplex virus type 2 infections in Africa: a systematic review. Open forum infectious diseases, 1(2), ofu043. PMCID: PMC4281803.
Full-text Article:  http://scholars.fhcrc.org/6583/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25734115?otool=fhcrclib

Richardson A, Hudgens MG, Gilbert PB, Fine JP. (2014). Nonparametric Bounds and Sensitivity Analysis of Treatment Effects. Stat Sci, 29(4), 596-618. PMCID: PMC4317325.
Full-text Article:  http://scholars.fhcrc.org/6416/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25663743?otool=fhcrclib

Simoes EAF, DeVincenzo JP, Boeckh M, Bont L, Crowe JEJ, Griffiths P, Hayden FG, Hodinka RL, Smyth RL, Spencer K, Thirstrup S, Walsh EE, Whitley RJ. (2015). Challenges and opportunities in developing respiratory syncytial virus therapeutics. J Infect Dis, 211 Suppl 1, S1-S20.
Full-text Article:  http://scholars.fhcrc.org/6545/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25713060?otool=fhcrclib

Sterrett S, Learn GH, Edlefsen PT, Haynes BF, Hahn BH, Shaw GM, Bar KJ. (2014). Low Multiplicity of HIV-1 Infection and No Vaccine Enhancement in VAX003 Injection Drug Users. Open forum infectious diseases, 1(2), ofu056. PMCID: PMC4281816.
Full-text Article:  http://scholars.fhcrc.org/6582/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25734126?otool=fhcrclib

Tang H, Singh S, Partyka K, Kletter D, Hsueh P, Yadav J, Ensink E, Bern M, Hostetter G, Hartman D, Huang Y, Brand RE, Haab BB. (2015). Glycan motif profiling reveals plasma sialyl-Lewis X elevations in pancreatic cancers that are negative for CA 19-9. Mol Cell Proteomics.
Full-text Article:  http://scholars.fhcrc.org/6581/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25733690?otool=fhcrclib

Taylor JJ, Pape KA, Steach HR, Jenkins MK. (2015). Humoral immunity. Apoptosis and antigen affinity limit effector cell differentiation of a single naive B cell. Science, 347(6223), 784-7.
Full-text Article:  http://scholars.fhcrc.org/6528/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25636798?otool=fhcrclib

van Rhee F, Rothman M, Ho KF, Fleming S, Wong RS, Fossa A, Dispenzieri A, Cavet J, Munshi N, Vermeulen J, Casper C. (2015). Patient-reported Outcomes for Multicentric Castleman's Disease in a Randomized, Placebo-controlled Study of Siltuximab. Patient.
Full-text Article:  http://scholars.fhcrc.org/6577/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25736164?otool=fhcrclib

Vrancken B, Lemey P, Rambaut A, Bedford T, Longdon B, Guenthard HF, Suchard MA. (2015). Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution. Methods Ecol Evol, 6(1), 67-82.
Full-text Article:  http://scholars.fhcrc.org/6497/
PubMed Record: No PubMed record available.

Wandell G, Molina Y, Sanchez H, Greer AC, Bain C, Rios J, Segura P, Lama J, Sanchez J, Duerr A. (2015). Demand for Acute Hiv Testing in High-Risk Men Who Have Sex with Men and Transgender Women in Lima, Peru. J Invest Med, 63(1), 96-.
Full-text Article:  http://scholars.fhcrc.org/6505/
PubMed Record: No PubMed record available.
 

January - February

Baeten JM, Donnell D, Mugo NR, Ndase P, Thomas KK, Campbell JD, Wangisi J, Tappero JW, Bukusi EA, Cohen CR, Katabira E, Ronald A, Tumwesigye E, Were E, Fife KH, Kiarie J, Farquhar C, John-Stewart G, Kidoguchi L, Coombs RW, Hendrix C, Marzinke MA, Frenkel L, Haberer JE, Bangsberg D, Celum C, Team PPS. (2014). Single-agent tenofovir versus combination emtricitabine plus tenofovir for pre-exposure prophylaxis for HIV-1 acquisition: an update of data from a randomised, double-blind, phase 3 trial. The Lancet Infectious diseases, 14(11), 1055-64.
Full-text Article:  http://scholars.fhcrc.org/5931/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25300863?otool=fhcrclib

Boeckh M, Murphy WJ, Peggs KS. (2014). Recent Advances in Cytomegalovirus: An Update on Pharmacologic and Cellular Therapies. Biol Blood Marrow Transplant.
Full-text Article:  http://scholars.fhcrc.org/6077/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25452035?otool=fhcrclib

Carter JH, Lenahan JL, Ishak GE, Geyer JR, Pollard J, Englund JA. (2014). Medical management of invasive fungal infections of the central nervous system in pediatric cancer patients. Pediatr Blood Cancer.
Full-text Article:  http://scholars.fhcrc.org/5974/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25407593?otool=fhcrclib

Casper C, Chaturvedi S, Munshi N, Wong R, Qi M, Schaffer M, Bandekar R, Huang Y, Hall B, Vermeulen J, Reddy M, Van Rhee F. (2014). Inflammatory and Anemia-Related Markers in a Phase 2, Randomized, Double-Blind, Placebo-Controlled Study of Siltuximab (Anti-Il-6 Monoclonal Antibody) in Multicentric Castleman's Disease Patients. Haematologica, 99(s1), 465-.
Full-text Article:  http://scholars.fhcrc.org/5915/
PubMed Record: No PubMed record available

Chang H-W, Tartaglia LJ, Whitney JB, Lim S-Y, Sanisetty S, Lavine CL, Seaman MS, Rademeyer C, Williamson C, Ellingson-Strouss K, Stamatatos L, Kublin J, Barouch DH. (2014). Generation and Evaluation of Clade C Simian-Human Immunodeficiency Virus Challenge Stocks. J Virol.
Full-text Article:  http://scholars.fhcrc.org/6094/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25473043?otool=fhcrclib

Chen X, Chen J-S, Zhang L, Li J-G, Yao L, Self SG, Sun X, Tang N-J. (2015). Levels of PCDDs, PCDFs and dl-PCBs in the blood of childbearing-aged women living in the vicinity of a chemical plant in Tianjin: A primary study. Chemosphere, 118, 1-4.
Full-text Article:  http://scholars.fhcrc.org/5997/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25433396?otool=fhcrclib

Courtot M, Meskas J, Diehl AD, Droumeva R, Gottardo R, Jalali A, Renani JT, Maecker HT, McCoy JP, Ruttenberg A, Scheuermann RH, Brinkman RR. (2014). flowCL: ontology-based cell population labelling in flow cytometry. Bioinformatics.
Full-text Article:  http://scholars.fhcrc.org/6051/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25481008?otool=fhcrclib

Dimitrov DT, Troeger C, Halloran ME, Longini IM, Chao DL. (2014). Comparative effectiveness of different strategies of oral cholera vaccination in bangladesh: a modeling study. PLoS Negl Trop Dis, 8(12), e3343.
Full-text Article:  http://scholars.fhcrc.org/6097/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25473851?otool=fhcrclib

Fleming TR. (2014). Protecting the confidentiality of interim data: Addressing current challenges. Clinical trials.
Full-text Article:  http://scholars.fhcrc.org/6052/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25475877?otool=fhcrclib

Halloran ME, Vespignani A, Bharti N, Feldstein LR, Alexander KA, Ferrari M, Shaman J, Drake JM, Porco T, Eisenberg JNS, Del Valle SY, Lofgren E, Scarpino SV, Eisenberg MC, Gao D, Hyman JM, Eubank S, Longini IMJ. (2014). Ebola: mobility data. Science, 346(6208), 433.
Full-text Article:  http://scholars.fhcrc.org/5934/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25342792?otool=fhcrclib

Hawn TR, Day TA, Scriba TJ, Hatherill M, Hanekom WA, Evans TG, Churchyard GJ, Kublin JG, Bekker L-G, Self SG. (2014). Tuberculosis Vaccines and Prevention of Infection. Microbiol Mol Biol Rev, 78(4), 650-71.
Full-text Article:  http://scholars.fhcrc.org/6011/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25428938?otool=fhcrclib

Hess G, Kirsch A, Wong RS, Casper C, Munshi N, Fossa A, Cavet J, Bandekar R, Rothman M, Puchalski TA, Chaturvedi S, van de Velde H, Vermeulen J, van Rhee F. (2014). A multicenter, randomized, double-blind, placebo-controlled study of the efficacy and safety of Siltuximab, an anti-interleukin-6 monoclonal antibody, in patients with Multicentric Castleman's disease. Oncol Res Treat, 37(S5), 77-.
Full-text Article:  http://scholars.fhcrc.org/6040/
PubMed Record: No PubMed record available.

Hill JA, Sedlak RH, Jerome KR. (2014). Past, present, and future perspectives on the diagnosis of Roseolovirus infections. Curr Opin Virol, 9C, 84-90.
Full-text Article:  http://scholars.fhcrc.org/6067/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25462438?otool=fhcrclib

Hraber P, Korber BT, Lapedes AS, Bailer RT, Seaman MS, Gao H, Greene KM, McCutchan F, Williamson C, Kim JH, Tovanabutra S, Hahn BH, Swanstrom R, Thomson MM, Gao F, Harris L, Giorgi E, Hengartner N, Bhattacharya T, Mascola JR, Montefiori DC. (2014). Impact of Clade, Geography, and Age of the Epidemic on HIV-1 Neutralization by Antibodies. J Virol, 88(21), 12623-43.
Full-text Article:  http://scholars.fhcrc.org/5936/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25142591?otool=fhcrclib

Kahle EM, Bolton M, Hughes JP, Donnell D, Celum C, Lingappa JR, Ronald A, Cohen CR, de Bruyn G, Fong Y, Katabira E, McElrath MJ, Baeten JM, for the Partners in Prevention HSVHIVTST. (2014). Plasma cytokine levels and risk of HIV-1 transmission and acquisition: a nested case-control study among HIV-1 serodiscordant couples. J Infect Dis.
Full-text Article:  http://scholars.fhcrc.org/5877/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25389306?otool=fhcrclib

Kuypers J, Boughton G, Chung J, Hussey L, Huang M-L, Cook L, Jerome KR. (2014). Comparison of the Simplexa HSV1 & 2 Direct kit and laboratory-developed real-time PCR assays for herpes simplex virus detection. J Clin Virol.
Full-text Article:  http://scholars.fhcrc.org/6098/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25464965?otool=fhcrclib

Lazarus EM, Otwombe K, Adonis T, Sebastian E, Gray G, Grunenberg N, Roux S, Churchyard G, Innes C, Laher F. (2014). Uptake of Genital Mucosal Sampling in HVTN 097, a Phase 1b HIV Vaccine Trial in South Africa. PLoS One, 9(11), e112303. PMCID: PMC4234370.
Full-text Article:  http://scholars.fhcrc.org/5966/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25401780?otool=fhcrclib

Mackelprang RD, Carrington M, Thomas KK, Hughes JP, Baeten JM, Wald A, Farquhar C, Fife K, Campbell MS, Kapiga S, Gao X, Mullins JI, Lingappa JR. (2014). Host genetic and viral determinants of HIV-1 RNA set-point among HIV-1 seroconverters from sub-Saharan Africa. J Virol.
Full-text Article:  http://scholars.fhcrc.org/6054/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25473042?otool=fhcrclib

Manrique A, Adams E, Barouch DH, Fast P, Graham BS, Kim JH, Kublin JG, McCluskey M, Pantaleo G, Robinson HL, Russell N, Snow W, Johnston MI. (2014). The immune space: a concept and template for rationalizing vaccine development. AIDS Res Hum Retroviruses, 30(11), 1017-22. PMCID: PMC4208609.
Full-text Article:  http://scholars.fhcrc.org/5939/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/24857015?otool=fhcrclib

Mather CA, Sadlak RH, Jerome KR, Zerr D, Yeung C. (2014). Droplet Digital PCR for Detection of HHV6 in Tissue Biopsies from Allogeneic Stem Cell Transplant Patients with Acute Graft-Versus-Host Disease. Journal of Molecular Diagnostics, 16(6), 729-.
Full-text Article:  http://scholars.fhcrc.org/6032/
PubMed Record: No PubMed record available.

Mohamoud YA, Miller FD, Abu-Raddad LJ. (2014). Potential for human immunodeficiency virus parenteral transmission in the Middle East and North Africa: an analysis using hepatitis C virus as a proxy biomarker. World J Gastroenterol, 20(36), 12734-52. PMCID: PMC4177460.
Full-text Article:  http://scholars.fhcrc.org/5980/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25278675?otool=fhcrclib

Preiksaitis CM, Kuypers JM, Fisher CE, Campbell AP, Jerome KR, Huang M-L, Boeckh M, Limaye AP. (2014). A patient self-collection method for longitudinal monitoring of respiratory virus infection in solid organ transplant recipients. J Clin Virol.
Full-text Article:  http://scholars.fhcrc.org/6100/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25464966?otool=fhcrclib

Sugimoto JD, Koepke AA, Kenah EE, Halloran ME, Chowdhury F, Khan AI, LaRocque RC, Yang Y, Ryan ET, Qadri F, Calderwood SB, Harris JB, Longini IMJ. (2014). Household Transmission of Vibrio cholerae in Bangladesh. PLoS Negl Trop Dis, 8(11), e3314.
Full-text Article:  http://scholars.fhcrc.org/5951/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25411971?otool=fhcrclib

Talley AK, Healy SA, Finney OC, Murphy SC, Kublin J, Salas CJ, Lundebjerg S, Gilbert P, Van Voorhis WC, Whisler J, Wang R, Ockenhouse CF, Heppner DG, Kappe SH, Duffy PE. (2014). Safety and Comparability of Controlled Human Plasmodium falciparum Infection by Mosquito Bite in Malaria-Naive Subjects at a New Facility for Sporozoite Challenge. PLoS One, 9(11), e109654. PMCID: PMC4236046.
Full-text Article:  http://scholars.fhcrc.org/5967/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25405724?otool=fhcrclib

van der Straten A, Mayo A, Brown ER, Amico KR, Cheng H, Laborde N, Marrazzo J, Torjesen K. (2014). Perceptions and Experiences with the VOICE Adherence Strengthening Program (VASP) in the MTN-003 Trial. AIDS Behav.
Full-text Article:  http://scholars.fhcrc.org/5884/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25384907?otool=fhcrclib

Van Rhee F, Fossa A, van de Velde H, Qi M, Ho KF, Fleming S, Vermeulen J, Rothman M, Casper C. (2014). Improvements in Hemoglobin Levels and Fatigue in a Randomized, Double Blinded, Placebo Controlled Study (MCD3282001) of Siltuximab in Patients with Multicentric Castleman's Disease (MCD). Haematologica, 99(s1), 464-5.
Full-text Article:  http://scholars.fhcrc.org/5923/
PubMed Record: No PubMed record available


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