Vaccine and Infectious Disease Division

Recent Publications

Print outs of scientific publications

2017

January

Astronomo RD, Santra S, Ballweber-Fleming L, Westerberg KG, Mach L, Hensley-McBain T, Sutherland L, Mildenberg B, Morton G, Yates NL, Mize GJ, Pollara J, Hladik F, Ochsenbauer C, Denny TN, Warrier R, Rerks-Ngarm S, Pitisuttithum P, Nitayapan S, Kaewkungwal J, Ferrari G, Shaw GM, Xia SM, Liao HX, Montefiori DC, Tomaras GD, Haynes BF, McElrath M Juliana. Neutralization Takes Precedence Over IgG or IgA Isotype-related Functions in Mucosal HIV-1 Antibody-mediated Protection. EBioMedicine. 2016 Dec;14:97-111.
Full-text Article: http://scholars.fhcrc.org/10851/

Bajema KL, Dalesandro MF, Fredricks DN, Ramchandani M. Disseminated coccidioidomycosis presenting with intramedullary spinal cord abscesses Management challenges. Med Mycol Case Rep. 2016 Dec 2;15:1-4.
Full-text Article: http://scholars.fhcrc.org/10972/

Chen I, Chau G, Wang J, Clarke W, Marzinke MA, Cummings V, Breaud A, Laeyendecker O, Fields SD, Griffith S, Scott HM, Shoptaw S, Del Rio C, Magnus M, Mannheimer S, Tieu HV, Wheeler DP, Mayer KH, Koblin BA, Eshleman SH.  Analysis of HIV Diversity in HIV-Infected Black Men Who Have Sex with Men (HPTN 061). PLoS One. 2016 Dec 9;11(12):e0167629
Full-text Article: http://scholars.fhcrc.org/10876/

Cranston RD, Lama JR, Richardson BA, Carballo-Dieguez A, Kunjara Na Ayudhya RP, Liu K, Patterson KB, Leu CS, Galaska B, Jacobson CE, Parikh UM, Marzinke MA, Hendrix CW, Johnson S, Piper JM, Grossman C, Ho KS, Lucas J, Pickett J, Bekker LG, Chariyalertsak S, Chitwarakorn A, Gonzales P, Holtz TH, Liu AY, Mayer KH, Zorrilla C, Schwartz JL, Rooney J, McGowan I. MTN-017 A Rectal Phase 2 Extended Safety and Acceptability Study of Tenofovir Reduced-Glycerin 1% Gel. Clin Infect Dis. 2016 Dec 16. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10910/

Golden MR, Hughes JP, Dombrowski JC. Optimizing the Timing of HIV Screening as Part of Routine Medical Care. AIDS Patient Care STDS. 2017 Jan;31(1):27-32.
Full-text Article: http://scholars.fhcrc.org/10988/

Greninger AL, Bateman AC, Atienza EE, Wendt S, Makhsous N, Jerome KR, Cook L. Copy number heterogeneity of JC virus standards. J Clin Microbiol. 2016 Dec 14. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10889/

Kublin JG, Mikolajczak SA, Sack BK, Fishbaugher ME, Seilie A, Shelton L, VonGoedert T, Firat M, Magee S, Fritzen E, Betz W, Kain HS, Dankwa DA, Steel RW, Vaughan AM, Noah Sather D, Murphy SC, Kappe SH. Complete attenuation of genetically engineered Plasmodium falciparum sporozoites in human subjects. Sci Transl Med. 2017 Jan 4;9(371).
Full-text Article: http://scholars.fhcrc.org/10984/

Lampe JW, Huang Y, Neuhouser ML, Tinker LF, Song X, Schoeller DA, Kim S, Raftery D, Di C, Zheng C, Schwarz Y, Van Horn L, Thomson CA, Mossavar-Rahmani Y, Beresford SA, Prentice RL. Dietary biomarker evaluation in a controlled feeding study in women from the Women's Health Initiative cohort. Am J Clin Nutr. 2017 Feb;105(2):466-475.
Full-text Article: http://scholars.fhcrc.org/10944/

Maziarz RT, Brazauskas R, Chen M, McLeod AA, Martino R, Wingard JR, Aljurf M, Battiwalla M, Dvorak CC, Geroge B, Guinan EC, Hale GA, Lazarus HM, Lee JW, Liesveld JL, Ramanathan M, Reddy V, Savani BN, Smith FO, Strasfeld L, Taplitz RA, Ustun C, Boeckh MJ, Gea-Banacloche J, Lindemans CA, Auletta JJ, Riches ML. Pre-existing invasive fungal infection is not a contraindication for allogeneic HSCT for patients with hematologic malignancies a CIBMTR study. Bone Marrow Transplant. 2017 Feb;52(2):270-278.
Full-text Article: http://scholars.fhcrc.org/10922/

Posavad CM, Zhao L, Dong L, Jin L, Stevens CE, Magaret AS, Johnston C, Wald A, Zhu J, Corey L, Koelle DM. Enrichment of herpes simplex virus type 2 (HSV-2) reactive mucosal T cells in the human female genital tract. Mucosal Immunol. 2017 Jan 4. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10977/

Qi L, Sun Y, Gilbert PB. Generalized semiparametric varying-coefficient model for longitudinal data with applications to adaptive treatment randomizations. Biometrics. 2016 Dec 5. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10848/

Sahoo F, Hill JA, Xie H, Leisenring W, Yi J, Goyal S, Kimball LE, Lee I, Seo S, Davis C, Pergam SA, Flowers ME, Liaw KL, Holmberg L, Boeckh M. Herpes Zoster in Autologous Hematopoietic Cell Transplant Recipients in the Era of Acyclovir or Valacyclovir Prophylaxis and Novel Treatment and Maintenance Therapies. Biol Blood Marrow Transplant. 2017 Mar;23(3):505-511.
Full-text Article: http://scholars.fhcrc.org/10966/

Wald A, Timmler B, Magaret A, Warren T, Tyring S, Johnston C, Fife K, Selke S, Huang ML, Stobernack HP, Zimmermann H, Corey L, Birkmann A, Ruebsamen-Schaeff H. Effect of Pritelivir Compared With Valacyclovir on Genital HSV-2 Shedding in Patients With Frequent Recurrences A Randomized Clinical Trial. JAMA. 2016 Dec 20;316(23):2495-2503.
Full-text Article: http://scholars.fhcrc.org/10931/

Wald A. Hermeneutics of Herpes The American Sexually Transmitted Diseases Association Distinguished Career Award Lecture. Sex Transm Dis. 2017 Jan;44(1):1-5.
Full-text Article: http://scholars.fhcrc.org/10868/

Xi LF, Schiffman M, Ke Y, Hughes JP, Galloway DA, He Z, Hulbert A, Winer RL, Koutsky LA, Kiviat NB. Type-Dependent Association between Risk of Cervical Intraepithelial Neoplasia and Viral Load of Oncogenic Human Papillomavirus Types Other than Types 16 and 18. Int J Cancer. 2017 Jan 4. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10986/

2016

December 

Bender Ignacio RA, Ramchandani MS, Laing KJ, Johnston CM, Koelle DM. T Cell Immunity to Varicella-Zoster Virus in the Setting of Advanced HIV and Multiple Varicella-Zoster Virus Recurrences. Viral Immunol. 2016 Nov 21.
Full-text Article: http://scholars.fhcrc.org/10727/

Cherutich P, Golden MR, Wamuti B, Richardson BA, Asbjornsdottir KH, Otieno FA, Ng'ang'a A, Mutiti PM, Macharia P, Sambai B, Dunbar M, Bukusi D, Farquhar C. Assisted partner services for HIV in Kenya: a cluster randomised controlled trial. Lancet HIV. 2016 Nov 29. pii: S2352-3018(16)30214-4.
Full-text Article: http://scholars.fhcrc.org/10836/

Chow EJ, Cushing-Haugen KL, Cheng GS, Boeckh M, Khera N, Lee SJ, Leisenring WM, Martin PJ, Mueller BA, Schwartz SM, Baker KS. Morbidity and Mortality Differences Between Hematopoietic Cell Transplantation Survivors and Other Cancer Survivors. J Clin Oncol. 2016 Nov 21:JCO2016688457.
Full-text Article: http://scholars.fhcrc.org/10706/

DeMets DL, Fleming TR, Geller G, Ransohoff DF. Institutional Responsibility and the Flawed Genomic Biomarkers at Duke University A Missed Opportunity for Transparency and Accountability. Sci Eng Ethics. 2016 Nov 23.
Full-text Article: http://scholars.fhcrc.org/10735/

Fong Y, Di C, Huang Y, Gilbert PB. Model-robust inference for continuous threshold regression models. Biometrics. 2016 Nov 17.
Full-text Article: http://scholars.fhcrc.org/10705/

Hall Sedlak R, Nguyen T, Palileo I, Jerome KR, Kuypers J. Superiority of digital RT-PCR over real-time RT-PCR for quantitation of highly divergent human rhinoviruses. J Clin Microbiol. 2016 Nov 23. pii: JCM.01970-16.
Full-text Article: http://scholars.fhcrc.org/10733/

Hanscom B, Janes HE, Guarino PD, Huang Y, Brown ER, Chen YQ, Hammer SM, Gilbert PB, Donnell DJ. Brief Report Preventing HIV-1 Infection in Women Using Oral Preexposure Prophylaxis A Meta-analysis of Current Evidence. J Acquir Immune Defic Syndr. 2016 Dec 15;73(5):606-608.
Full-text Article: http://scholars.fhcrc.org/10691/

Huang Y, Ferrari G, Alter G, Forthal DN, Kappes JC, Lewis GK, Love JC, Borate B, Harris L, Greene K, Gao H, Phan TB, Landucci G, Goods BA, Dowell KG, Cheng HD, Bailey-Kellogg C, Montefiori DC, Ackerman ME. Diversity of Antiviral IgG Effector Activities Observed in HIV-Infected and Vaccinated Subjects. J Immunol. 2016 Dec 15;197(12):4603-4612.
Full-text Article: http://scholars.fhcrc.org/10841/

Jerome KR. Disruption or Excision of Provirus as an Approach to HIV Cure. AIDS Patient Care STDS. 2016 Dec;30(12):551-555.
Full-text Article: http://scholars.fhcrc.org/10700/

Justman J, Reed JB, Bicego G, Donnell D, Li K, Bock N, Koler A, Philip NM, Mlambo CK, Parekh BS, Duong YT, Ellenberger DL, El-Sadr WM, Nkambule R. Swaziland HIV Incidence Measurement Survey (SHIMS) a prospective national cohort study. Lancet HIV. 2016 Nov 15. pii: S2352-3018(16)30190-4.
Full-text Article: http://scholars.fhcrc.org/10721/

Korhonen C, Srinivasan S, Huang D, Ko DL, Sanders EJ, Peshu NM, Krieger JN, Muller CH, Coombs RW, Fredricks DN, Graham SM. Semen Bacterial Concentrations and HIV-1 RNA Shedding among HIV-1-Seropositive Kenyan Men. J Acquir Immune Defic Syndr. 2016 Nov 14.
Full-text Article: http://scholars.fhcrc.org/10726/

Lee JY, Dhakal I, Casper C, Noy A, Palefsky JM, Haigentz M, Krown SE, Ambinder RF, Mitsuyasu RT. Risk of Cancer among Commercially Insured HIV-Infected Adults on Antiretroviral Therapy. J Cancer Epidemiol. 2016;2016:2138259.
Full-text Article: http://scholars.fhcrc.org/10734/

Magaret A, Dong L, John M, Mallal SA, James I, Warren T, Gaudieri S, Koelle DM, Wald A. HLA Class I and II alleles, heterozygosity and HLA-KIR interactions are associated with rates of genital HSV shedding and lesions. Genes Immun. 2016 Dec;17(7):412-418.
Full-text Article: http://scholars.fhcrc.org/10698/

Ngwa MC, Liang S, Kracalik IT, Morris L, Blackburn JK, Mbam LM, Ba Pouth SF, Teboh A, Yang Y, Arabi M, Sugimoto JD, Morris JG, Jr. Cholera in Cameroon, 2000-2012 Spatial and Temporal Analysis at the Operational (Health District) and Sub Climate Levels. PLoS Negl Trop Dis. 2016 Nov 17;10(11):e0005105.
Full-text Article: http://scholars.fhcrc.org/10699/

Schwartz LM, Halloran ME, Rowhani-Rahbar A, Neuzil KM, Victor JC. Rotavirus vaccine effectiveness in low-income settings An evaluation of the test-negative design. Vaccine. 2017 Jan 3;35(1):184-190.
Full-text Article: http://scholars.fhcrc.org/10729/

Song X, Diep P, Schenk JM, Casper C, Orem J, Makhoul Z, Lampe JW, Neuhouser ML. Changes in relative and absolute concentrations of plasma phospholipid fatty acids observed in a randomized trial of Omega-3 fatty acids supplementation in Uganda. Prostaglandins Leukot Essent Fatty Acids. 2016 Nov;114:11-16.
Full-text Article: http://scholars.fhcrc.org/10797/

Wagner AD, Mugo C, Njuguna IN, Maleche-Obimbo E, Sherr K, Inwani IW, Hughes JP, Wamalwa DC, John-Stewart GC, Slyker JA. Implementation and Operational Research Active Referral of Children of HIV-Positive Adults Reveals High Prevalence of Undiagnosed HIV. J Acquir Immune Defic Syndr. 2016 Dec 15;73(5):e83-e89.
Full-text Article: http://scholars.fhcrc.org/10692/

November

Andersen-Nissen E, Chang JT, Thomas KK, Adams D, Celum C, Sanchez J, Coombs RW, McElrath MJ, Baeten JM. Herpes Simplex Virus Suppressive Therapy in Herpes Simplex Virus-2/Human Immunodeficiency Virus-1 Coinfected Women Is Associated With Reduced Systemic CXCL10 But Not Genital Cytokines. Sex Transm Dis. 2016 Dec;43(12):761-764.
Full-text Article: http://scholars.fhcrc.org/10667/

Barasch J, Hollmen M, Deng R, Hod EA, Rupert PB, Abergel RJ, Allred BE, Xu K, Darrah SF, Tekabe Y, Perlstein A, Wax R, Bruck E, Stauber J, Corbin KA, Buchen C, Slavkovich V, Graziano J, Spitalnik SL, Bao G, Strong RK, Qiu A. Disposal of iron by a mutant form of lipocalin 2. Nat Commun. 2016 Oct 31;7:12973.
Full-text Article: http://scholars.fhcrc.org/10613/

Bedford T, Malik HS. Did a Single Amino Acid Change Make Ebola Virus More Virulent? Cell. 2016 Nov 3;167(4):892-894.
Full-text Article: http://scholars.fhcrc.org/10645/

Captain I, Deblonde GJ, Rupert PB, An DD, Illy MC, Rostan E, Ralston CY, Strong RK, Abergel RJ. Engineered Recognition of Tetravalent Zirconium and Thorium by Chelator-Protein Systems Toward Flexible Radiotherapy and Imaging Platforms. Inorg Chem. 2016 Nov 21;55(22):11930-11936.
Full-text Article: http://scholars.fhcrc.org/10625/

Elmasry S, Wadhwa S, Bang BR, Cook L, Chopra S, Kanel G, Kim B, Harper T, Feng Z, Jerome KR, Kahn J, Saito T. Detection of Occult Hepatitis C Virus Infection in Patients Who Achieved a Sustained Virologic Response to Direct-acting Antiviral Agents for Recurrent Infection After Liver Transplantation. Gastroenterology. 2016 Nov 9. pii: S0016-5085(16)35323-9.
Full-text Article: http://scholars.fhcrc.org/10686/

Fogel JM, Clarke W, Kulich M, Piwowar-Manning E, Breaud A, Olson MT, Marzinke MA, Laeyendecker O, Fiamma A, Donnell D, Mbwambo JK, Richter L, Gray G, Sweat M, Coates TJ, Eshleman SH. Antiretroviral drug use in a cross-sectional population survey in Africa NIMH Project Accept (HPTN 043). J Acquir Immune Defic Syndr. 2016 Nov 3.
Full-text Article: http://scholars.fhcrc.org/10664/

Graham JB, Swarts JL, Wilkins C, Thomas S, Green R, Sekine A, Voss KM, Ireton RC, Mooney M, Choonoo G, Miller DR, Treuting PM, Pardo Manuel de Villena F, Ferris MT, McWeeney S, Gale M, Jr., Lund JM. A Mouse Model of Chronic West Nile Virus Disease. PLoS Pathog. 2016 Nov 2;12(11):e1005996.
Full-text Article: http://scholars.fhcrc.org/10630/

Greninger AL, Zerr DM, Qin X, Adler AL, Sampoleo R, Kuypers JM, Englund JA, Jerome KR. Rapid metagenomic next-generation sequencing during an investigation of hospital-acquired human parainfluenza virus 3 infections. J Clin Microbiol. 2016 Oct 26. pii: JCM.01881-16.
Full-text Article: http://scholars.fhcrc.org/10609/

Gulick RM, Wilkin TJ, Chen YQ, Landovitz RJ, Amico KR, Young AM, Richardson P, Marzinke MA, Hendrix CW, Eshleman SH, McGowan I, Cottle LM, Andrade A, Marcus C, Klingman KL, Chege W, Rinehart AR, Rooney JF, Andrew P, Salata RA, Magnus M, Farley JE, Liu A, Frank I, Ho K, Santana J, Stekler JD, McCauley M, Mayer KH. Phase 2 study of the safety and tolerability of maraviroc-containing regimens to prevent HIV infection in men who have sex with men (MSM) (HPTN 069/ACTG a5305). J Infect Dis. 2016 Nov 2. pii: jiw525.
Full-text Article: http://scholars.fhcrc.org/10641/

Hertz T, Logan MG, Rolland M, Magaret CA, Rademeyer C, Fiore-Gartland A, Edlefsen PT, DeCamp A, Ahmed H, Ngandu N, Larsen BB, Frahm N, Marais J, Thebus R, Geraghty D, Hural J, Corey L, Kublin J, Gray G, McElrath MJ, Mullins JI, Gilbert PB, Williamson C. A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial. Vaccine. 2016 Nov 11;34(47):5792-5801.
Full-text Article: http://scholars.fhcrc.org/10559/

Khosropour CM, Dombrowksi JC, Hughes JP, Manhart LE, Golden MR. (2016). Evaluation of a Computer-Based Recruitment System for Enrolling Men Who Have Sex With Men Into an Observational HIV Behavioral Risk Study. Am J Epidemiol. 2016 Sep 15;184(6):477-83.
Full-text Article: http://scholars.fhcrc.org/10670/

Kinuthia J, Richardson BA, Drake AL, Matemo D, Unger JA, McClelland RS, John-Stewart G. Sexual Behavior and Vaginal Practices during Pregnancy and Postpartum Implications for HIV Prevention Strategies. J Acquir Immune Defic Syndr. 2016 Nov 4.
Full-text Article: http://scholars.fhcrc.org/10663/

Koepke AA, Longini IM, Jr., Halloran ME, Wakefield J, Minin VN. Predictive modeling of cholera outbreaks in Bangladesh. Ann Appl Stat. 2016 Jun;10(2):575-595.
Full-text Article: http://scholars.fhcrc.org/10544/

Kourtis AP, Wiener J, King CC, Heffron R, Mugo NR, Nanda K, Pyra M, Donnell D, Celum C, Lingappa JR, Baeten JM. Effect of Pregnancy on Response to Antiretroviral Therapy in HIV-infected African women. J Acquir Immune Defic Syndr. 2017 Jan 1;74(1):38-43.
Full-text Article: http://scholars.fhcrc.org/10591/

Lipsitch M, Barclay W, Raman R, Russell CJ, Belser JA, Cobey S, Kasson PM, Lloyd-Smith JO, Maurer-Stroh S, Riley S, Beauchemin CA, Bedford T, Friedrich TC, Handel A, Herfst S, Murcia PR, Roche B, Wilke CO, Russell CA. Viral factors in influenza pandemic risk assessment. Elife. 2016 Nov 11;5. pii: e18491.
Full-text Article: http://scholars.fhcrc.org/10680/

Martin PJ, Fan W, Storer BE, Levine DM, Zhao LP, Warren EH, Flowers ME, Lee SJ, Carpenter PA, Boeckh M, Hingorani S, Yan L, Hu Q, Preus L, Liu S, Spellman S, Zhu X, Pasquini M, McCarthy P, Stram D, Sheng X, Pooler L, Haiman CA, Sucheston-Campbell L, Hahn T, Hansen JA. Replication of associations between genetic polymorphisms and chronic graft-versus-host disease. Blood. 2016 Nov 17;128(20):2450-2456.
Full-text Article: http://scholars.fhcrc.org/10563/

Merler S, Ajelli M, Fumanelli L, Parlamento S, Pastore YPA, Dean NE, Putoto G, Carraro D, Longini IM, Jr., Halloran ME, Vespignani A. Containing Ebola at the Source with Ring Vaccination. PLoS Negl Trop Dis. 2016 Nov 2;10(11):e0005093.
Full-text Article: http://scholars.fhcrc.org/10629/

Oberle SG, Hanna-El-Daher L, Chennupati V, Enouz S, Scherer S, Prlic M, Zehn D. A Minimum Epitope Overlap between Infections Strongly Narrows the Emerging T Cell Repertoire. Cell Rep. 2016 Oct 11;17(3):627-635.
Full-text Article: http://scholars.fhcrc.org/10517/

Osorio LE, Boechat MI, Mirochnick M, Kumwenda N, Kreitchmann R, Emel L, Pinto J, Joao E, Santos B, Swenson M, George K, Sato P, Mofenson L, Nielsen-Saines K. Bone Age and Mineral Density Assessments Using Plain Roentgenograms in Tenofovir- Exposed Infants in Malawi and Brazil Enrolled in HIV Prevention Trials Network (HPTN) 057. Pediatr Infect Dis J. 2016 Oct 27.
Full-text Article: http://scholars.fhcrc.org/10620/

Pettifor A, MacPhail C, Hughes JP, Selin A, Wang J, Gomez-Olive FX, Eshleman SH, Wagner RG, Mabuza W, Khoza N, Suchindran C, Mokoena I, Twine R, Andrew P, Townley E, Laeyendecker O, Agyei Y, Tollman S, Kahn K. The effect of a conditional cash transfer on HIV incidence in young women in rural South Africa (HPTN 068) a phase 3,  randomised controlled trial. Lancet Glob Health. 2016 Dec;4(12):e978-e988.
Full-text Article: http://scholars.fhcrc.org/10653/

Ramchandani M, Kong M, Tronstein E, Selke S, Mikhaylova A, Magaret A, Huang ML, Johnston C, Corey L, Wald A. Herpes Simplex Virus Type 1 Shedding in Tears and Nasal and Oral Mucosa of Healthy Adults. Sex Transm Dis. 2016 Dec;43(12):756-760.
Full-text Article: http://scholars.fhcrc.org/10681/

Sen DR, Kaminski J, Barnitz RA, Kurachi M, Gerdemann U, Yates KB, Tsao HW, Godec J, LaFleur MW, Brown FD, Tonnerre P, Chung RT, Tully DC, Allen TM, Frahm N, Lauer GM, Wherry EJ, Yosef N, Haining WN. The epigenetic landscape of T cell exhaustion. Science. 2016 Dec 2;354(6316):1165-1169.
Full-text Article: http://scholars.fhcrc.org/10606/

Slyker JA, Richardson BA, Chung M, Atkinson C, Asbjornsdottir KH, Lehman D, Boeckh M, Emery V, Kiarie J, John-Stewart G. Maternal highly active antiretroviral therapy reduces vertical CMV transmission but does not reduce breast milk CMV levels. AIDS Res Hum Retroviruses. 2016 Dec 6.
Full-text Article: http://scholars.fhcrc.org/10611/

Wilson KS, Deya R, Masese L, Simoni JM, Stoep AV, Shafi J, Jaoko W, Hughes JP, McClelland RS. Prevalence and correlates of intimate partner violence in HIV-positive women engaged in transactional sex in Mombasa,  Kenya. Int J STD AIDS. 2016 Nov;27(13):1194-1203.
Full-text Article: http://scholars.fhcrc.org/10602/

Yacoob C, Pancera M, Vigdorovich V, Oliver BG, Glenn JA, Feng J, Sather DN, McGuire AT, Stamatatos L. Differences in Allelic Frequency and CDRH3 Region Limit the Engagement of HIV Env Immunogens by Putative VRC01 Neutralizing Antibody Precursors. Cell Rep. 2016 Nov 1;17(6):1560-1570.
Full-text Article: http://scholars.fhcrc.org/10631/  

October

Aubert M, Madden EA, Loprieno M, DeSilva Feelixge HS, Stensland L, Huang ML, Greninger AL, Roychoudhury P, Niyonzima N, Nguyen T, Magaret A, Galleto R, Stone D, Jerome KR. In vivo disruption of latent HSV by designer endonuclease therapy. JCI Insight. 2016 Sep 8;1(14). pii: e88468
Full-text Article: http://scholars.fhcrc.org/10416/

Beigi RH, Noguchi LM, Montgomery E, Biggio J, Hendrix CW, Marzinke MA, Dai JY, Pan J, Kunjara Na Ayudhya R, Schwartz JL, Isaacs K, Piper JM, Watts DH. A randomized safety and pharmacokinetic trial of daily tenofovir 1% gel in term and near-term pregnancy. J Int AIDS Soc. 2016 Sep 21;19(1):20990.
Full-text Article: http://scholars.fhcrc.org/10450/

Buchacz K, Farrior J, Beauchamp G, McKinstry L, Kurth AE, Zingman BS, Gordin FM, Donnell D, Mayer KH, El-Sadr WM, Branson B. Changing Clinician Practices and Attitudes Regarding the Use of Antiretroviral Therapy for HIV Treatment and Prevention Results from the HPTN 065 Study. J Int Assoc Provid AIDS Care. 2016 Oct 5. pii: 2325957416671410.
Full-text Article: http://scholars.fhcrc.org/10484/

Burian A, Wang KL, Finton KA, Lee N, Ishitani A, Strong RK, Geraghty DE. HLA-F and MHC-I Open Conformers Bind Natural Killer Cell Ig-Like Receptor KIR3DS1. PLoS One. 2016 Sep 20;11(9):e0163297.
Full-text Article: http://scholars.fhcrc.org/10411/

Campbell CMP, Viscidi RP, Torres BN, Lin HY, Fulp W, Abrahamsen M, Lazcano-Ponce E, Villa LL, Kreimer AR, Giuliano AR. Human Papillomavirus (HPV) L1 Serum Antibodies and the Risk of Subsequent Oral HPV Acquisition in Men The HIM Study. J Infect Dis. 2016 Jul 1;214(1):45-8.
Full-text Article: http://scholars.fhcrc.org/10383/

Cohen M, Eshleman S, McCauley M, Chen Y. Antiretroviral therapy to prevent HIV acquisition Limits of estimation from a population cohort. Clin Infect Dis. 2016 Dec 15;63(12):1679-1680.
Full-text Article: http://scholars.fhcrc.org/10485/

Fong YY, Yu XS. Transformation Model Choice in Nonlinear Regression Analysis of Fluorescence-Based Serial Dilution Assays. Stat Biopharm Res. 2016;8(1):1-11.
Full-text Article: http://scholars.fhcrc.org/10300/

Gilbert PB, Huang Y, Janes HE. Modeling HIV vaccine trials of the future. Curr Opin HIV AIDS. 2016 Nov;11(6):620-627.
Full-text Article: http://scholars.fhcrc.org/10452/

Heffron R, Parikh UM, Penrose KJ, Mugo N, Donnell D, Celum C, Mellors JW, Baeten JM. Objective Measurement of Inaccurate Condom Use Reporting Among Women Using Depot Medroxyprogesterone Acetate for Contraception. AIDS Behav. 2016 Oct 3.
Full-text Article: http://scholars.fhcrc.org/10493/

Huang Y, Gilbert PB, Fu R, Janes H. Statistical methods for down-selection of treatment regimens based on multiple endpoints, with application to HIV vaccine trials. Biostatistics. 2016 Sep 20. pii: kxw043.
Full-text Article: http://scholars.fhcrc.org/10412/

Ljungman P, Boeckh M, Hirsch HH, Josephson F, Lundgren J, Nichols G, Pikis A, Razonable RR, Miller V, Griffiths PD. Definitions of CMV infection and disease in transplant patients for use in clinical trials. Clin Infect Dis. 2016 Sep 28. pii: ciw668.
Full-text Article: http://scholars.fhcrc.org/10446/

Manguro GO, Masese LN, Deya RW, Magaret A, Wald A, McClelland RS, Graham SM. Genital HSV Shedding among Kenyan Women Initiating Antiretroviral Therapy. PLoS One. 2016 Sep 28;11(9):e0163541.
Full-text Article: http://scholars.fhcrc.org/10448/

Mayer BT, Matrajt L, Casper C, Krantz EM, Corey L, Wald A, Gantt S, Schiffer JT. Dynamics of persistent oral cytomegalovirus shedding during primary infection in Ugandan infants. J Infect Dis. 2016 Dec 1;214(11):1735-1743.
Full-text Article: http://scholars.fhcrc.org/10422/

Safren SA, Hughes JP, Mimiaga MJ, Moore AT, Friedman RK, Srithanaviboonchai K, Limbada M, Williamson BD, Elharrar V, Cummings V, Magidson JF, Gaydos CA, Celentano DD, Mayer KH. Frequency and predictors of estimated HIV transmissions and bacterial STI acquisition among HIV-positive patients in HIV care across three continents. J Int AIDS Soc. 2016 Sep 28;19(1):21096.
Full-text Article: http://scholars.fhcrc.org/10474/

Tian M, Cheng C, Chen X, Duan H, Cheng HL, Dao M, Sheng Z, Kimble M, Wang L, Lin S, Schmidt SD, Du Z, Joyce MG, Chen Y, DeKosky BJ, Chen Y, Normandin E, Cantor E, Chen RE, Doria-Rose NA, Zhang Y, Shi W, Kong WP, Choe M, Henry AR, Laboune F, Georgiev IS, Huang PY, Jain S, McGuire AT, Georgeson E, Menis S, Douek DC, Schief WR, Stamatatos L, Kwong PD, Shapiro L, Haynes BF, Mascola JR, Alt FW. Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires. Cell. 2016 Sep 8;166(6):1471-1484.e18.
Full-text Article: http://scholars.fhcrc.org/10379/

Trinh TT, Yatich N, Ngomoa R, McGrath CJ, Richardson BA, Sakr SR, Langat A, John-Stewart GC, Chung MH. Partner Disclosure and Early CD4 Response among HIV-Infected Adults Initiating Antiretroviral Treatment in Nairobi Kenya. PLoS One. 2016 Oct 6;11(10):e0163594.
Full-text Article: http://scholars.fhcrc.org/10481/

Wagner AD, Wachira CM, Njuguna IN, Maleche-Obimbo E, Sherr K, Inwani IW, Hughes JP, Wamalwa DC, John-Stewart GC, Slyker JA. Active referral of children of HIV-positive adults reveals high prevalence of undiagnosed HIV. J Acquir Immune Defic Syndr. 2016 Sep 19.
Full-text Article: http://scholars.fhcrc.org/10432/

Wen F, Bedford T, Cobey S. Explaining the geographical origins of seasonal influenza A (H3N2). Proc Biol Sci. 2016 Sep 14;283(1838).
Full-text Article: http://scholars.fhcrc.org/10374/

White D, Wilson KS, Masese LN, Wanje G, Jaoko W, Mandaliya K, Richardson BA, Kinuthia J, Simoni JM, McClelland RS. Alcohol Use and Associations With Biological Markers and Self-Reported Indicators of Unprotected Sex in Human Immunodeficiency Virus-Positive Female Sex Workers in Mombasa, Kenya. Sex Transm Dis. 2016 Oct;43(10):642-7.
Full-text Article: http://scholars.fhcrc.org/10377/

Wright PF, Connor RI, Wieland-Alter WF, Hoen AG, Boesch AW, Ackerman ME, Oberste MS, Gast C, Brickley EB, Asturias EJ, Ruttimann R, Bandyopadhyay AS. Vaccine-induced mucosal immunity to poliovirus analysis of cohorts from an open-label, randomised controlled trial in Latin American infants. Lancet Infect Dis. 2016 Sep 13. pii: S1473-3099(16)30169-4.
Full-text Article: http://scholars.fhcrc.org/10406/

Zhao Y, Wood DT, Kojouharov HV, Kuang Y, Dimitrov DT. Impact of Population Recruitment on the HIV Epidemics and the Effectiveness of HIV Prevention Interventions. Bull Math Biol. 2016 Oct;78(10):2057-2090.
Full-text Article: http://scholars.fhcrc.org/10495/

September

Ajelli M, Merler S,  Fumanelli L, Pastore YPA, Dean NE, Longini IM, Jr., Halloran ME, Vespignani A. Spatiotemporal dynamics of the Ebola epidemic in Guinea and implications for vaccination and disease elimination a computational modeling analysis. BMC Med. 2016 Sep 7;14(1):130.
Full-text Article: http://scholars.fhcrc.org/10339/

Asbjornsdottir KH, Hughes JP, Wamalwa D, Langat A, Slyker JA, Okinyi HM, Overbaugh J, Benki-Nugent S, Tapia K, Maleche-Obimbo E, Rowhani-Rahbar A, John-Stewart G. Differences in virologic and immunologic response to antiretroviral therapy among HIV-1 infected infants and children. AIDS. 2016 Nov 28;30(18):2835-2843.
Full-text Article: http://scholars.fhcrc.org/10342/

Baeten JM, Heffron R, Kidoguchi L, Mugo NR, Katabira E, Bukusi EA, Asiimwe S, Haberer JE, Morton J, Ngure K, Bulya N, Odoyo J, Tindimwebwa E, Hendrix C, Marzinke MA, Ware NC, Wyatt MA, Morrison S, Haugen H, Mujugira A, Donnell D, Celum C. Integrated Delivery of Antiretroviral Treatment and Pre-exposure Prophylaxis to HIV-1-Serodiscordant Couples A Prospective Implementation Study in Kenya and Uganda. PLoS Med. 2016 Aug 23;13(8):e1002099.
Full-text Article: http://scholars.fhcrc.org/10281/

Bitto A, Ito TK, Pineda VV, LeTexier NJ, Huang HZ, Sutlief E, Tung H, Vizzini N, Chen B, Smith K, Meza D, Yajima M, Beyer RP, Kerr KF, Davis DJ, Gillespie CH, Snyder JM, Treuting PM, Kaeberlein M. Transient rapamycin treatment can increase lifespan and healthspan in middle-aged mice. Elife. 2016 Aug 23;5. pii: e16351.
Full-text Article: http://scholars.fhcrc.org/10276/

Cheng GS, Stednick Z, Madtes DK, Boeckh M, McDonald GB, Pergam SA. Decline in the Use of Surgical Biopsy for Diagnosis of Pulmonary Disease in Hematopoietic Cell Transplant Recipients in an Era of Improved Diagnostics and Empirical Therapy. Biol Blood Marrow Transplant. 2016 Dec;22(12):2243-2249.
Full-text Article: http://scholars.fhcrc.org/10348/

Churchyard G, Mlisana K, Karuna S, Williamson AL, Williamson C, Morris L, Tomaras GD, De Rosa SC, Gilbert PB, Gu N, Yu C, Mkhize NN, Hermanus T, Allen M, Pensiero M, Barnett SW, Gray G, Bekker LG, Montefiori DC, Kublin J, Corey L. Sequential Immunization with gp140 Boosts Immune Responses Primed by Modified Vaccinia Ankara or DNA in HIV-Uninfected South African Participants. PLoS One. 2016 Sep 1;11(9):e0161753.
Full-text Article: http://scholars.fhcrc.org/10323/

Cohen SA, Woodfield MC, Boyle N, Stednick Z, Boeckh M, Pergam SA. Incidence and outcomes of bloodstream infections among hematopoietic cell transplant recipients from species commonly reported to be in over-the-counter probiotic formulations. Transpl Infect Dis. 2016 Oct;18(5):699-705.
Full-text Article: http://scholars.fhcrc.org/10197/

Eshleman SH, Hudelson SE, Redd AD, Swanstrom R, Ou SS, Zhang XC, Ping LH, Piwowar-Manning E, Porcella SF, Sievers MF, Martens CA, Bruno D, Dukhovlinova E, McCauley M, Gamble T, Fogel JM, Sabin D, Quinn TC, Gunde L, Maliwichi M, Nhando N, Akelo V, Moyo S, Panchia R, Kumarasamy N, Chotirosniramit N, Goncalves de Melo M, Pilotto J, Grinsztejn B, Mayer K, Chen YQ, Hughes JP, Cohen MS. Treatment as Prevention Characterization of partner infections in the HIV Prevention Trials Network 052 trial. J Acquir Immune Defic Syndr. 2017 Jan 1;74(1):112-116.
Full-text Article: http://scholars.fhcrc.org/10239/

Frew PM, Parker K, Vo L, Haley D, O'Leary A, Diallo DD, Golin CE, Kuo I, Soto-Torres L, Wang J, Adimora AA, Randall LA, Del Rio C, Hodder S. Socioecological factors influencing women's HIV risk in the United States qualitative findings from the women's HIV SeroIncidence study (HPTN 064). BMC Public Health. 2016 Aug 17;16(1):803.
Full-text Article: http://scholars.fhcrc.org/10237/

Hanscom B, Janes HE, Guarino PD, Huang Y, Brown ER, Chen YQ, Hammer SM, Gilbert PB, Donnell DJ. Preventing HIV-1 Infection in Women using Oral Pre-Exposure Prophylaxis A Meta-analysis of Current Evidence. J Acquir Immune Defic Syndr. 2016 Aug 16.
Full-text Article: http://scholars.fhcrc.org/10280/

Jenkins CL, Bagarazzi ML, Kiem HP, Levine AJ, Ando D, June CH, Reid T, Emery DW. Rethinking the Regulatory Infrastructure for Human Gene Transfer Clinical Trials. Mol Ther. 2016 Aug;24(7):1173-7.
Full-text Article: http://scholars.fhcrc.org/10212/

Kemp C, Gerth-Guyette E, Dube L, Andrasik M, Rao D. Mixed-Methods Evaluation of a Novel,  Structured,  Community-Based Support and Education Intervention for Individuals with HIV/AIDS in KwaZulu-Natal,  South Africa. AIDS Behav. 2016 Sep;20(9):1937-50.
Full-text Article: http://scholars.fhcrc.org/10284/

Lama JR, Karuna ST, Grant SP, Swann EM, Ganoza C, Segura P, Montano SM, Lacherre M, De Rosa SC, Buchbinder S, Sanchez J, McElrath MJ, Lemos MP. Transient Peripheral Immune Activation follows Elective Sigmoidoscopy or Circumcision in a Cohort Study of MSM at Risk of HIV Infection. PLoS One. 2016 Aug 18;11(8):e0160487.
Full-text Article: http://scholars.fhcrc.org/10252/

Lund JM, Broliden K, Pyra MN, Thomas KK, Donnell D, Irungu E, Muwonge TR, Mugo N, Manohar M, Jansson M, Mackelprang R, Marzinke MA, Baeten JM, Lingappa JR. HIV-1-neutralizing IgA is detected in genital secretions of highly HIV-1 exposed seronegative women on oral pre-exposure prophylaxis. J Virol. 2016 Oct 14;90(21):9855-9861.
Full-text Article: http://scholars.fhcrc.org/10293/

Monaco DC, Dilernia DA, Fiore-Gartland A, Yu T, Prince JL, Dennis KK, Qin K, Schaefer M, Claiborne DT, Kilembe W, Tang J, Price MA, Farmer P, Gilmour J, Bansal A, Allen S, Goepfert P, Hunter E. Balance between transmitted HLA preadapted and nonassociated polymorphisms is a major determinant of HIV-1 disease progression. J Exp Med. 2016 Sep 19;213(10):2049-63.
Full-text Article: http://scholars.fhcrc.org/10278/

Norwood MS, Hughes JP, Amico KR. The validity of self-reported behaviors methods for estimating underreporting of risk behaviors. Ann Epidemiol.
Full-text Article: http://scholars.fhcrc.org/10310/

Oseso L, Magaret AS, Jerome KR, Fox J, Wald A. Attitudes and Willingness to Assume Risk of Experimental Therapy to Eradicate Genital Herpes Simplex Virus Infection. Ann Epidemiol. 2016 Sep;26(9):612-618.e2.
Full-text Article: http://scholars.fhcrc.org/10223/

Rojas DP, Dean NE, Yang Y, Kenah E, Quintero J, Tomasi S, Ramirez EL, Kelly Y, Castro C, Carrasquilla G, Halloran ME, Longini IM. The epidemiology and transmissibility of Zika virus in Girardot and San Andres island, Colombia, September 2015 to January 2016. Euro Surveill. 2016;21(28):pii=30283.
Full-text Article: http://scholars.fhcrc.org/10325/

Vigdorovich V, Oliver BG, Carbonetti S, Dambrauskas N, Lange MD, Yacoob C, Leahy W, Callahan J, Stamatatos L, Sather DN. Repertoire comparison of the B-cell receptor-encoding loci in humans and rhesus macaques by next-generation sequencing. Clin Transl Immunology. 2016 Jul 22;5(7):e93.
Full-text Article: http://scholars.fhcrc.org/10228/

August

Baden LR, Swaminathan S, Angarone M, Blouin G, Camins BC, Casper C, Cooper B, Dubberke ER, Engemann AM, Freifeld AG, Greene JN, Ito JI, Kaul DR, Lustberg ME, Montoya JG, Rolston K, Satyanarayana G, Segal B, Seo SK, Shoham S, Taplitz R, Topal J, Wilson JW, Hoffmann KG, Smith C. Prevention and Treatment of Cancer-Related Infections, Version 2.2016, NCCN Clinical Practice Guidelines in Oncology. J Natl Compr Canc Netw. 2016;14(7):882-913.
Full-text Article: http://scholars.fhcrc.org/10040/

Benefield RJ, Barker BC, Gast CM, Alexander DP. Patient variables associated with nafcillin plasma concentrations and toxicity. Pharmacotherapy. 2016 Aug 2
Full-text Article: http://scholars.fhcrc.org/10172/

Casper C, Fitzmaurice C. Infection-related cancers prioritising an important and eliminable contributor to the global cancer burden. Lancet Glob Health. 2016 Jul 25. pii: S2214-109X(16)30169-3.
Full-text Article: http://scholars.fhcrc.org/10141/

Cohen MS, Chen YQ, McCauley M, Gamble T, Hosseinipour MC, Kumarasamy N, Hakim JG, Kumwenda J, Grinsztejn B, Pilotto JH, Godbole SV, Chariyalertsak S, Santos BR, Mayer KH, Hoffman IF, Eshleman SH, Piwowar-Manning E, Cottle L, Zhang XC, Makhema J, Mills LA, Panchia R, Faesen S, Eron J, Gallant J, Havlir D, Swindells S, Elharrar V, Burns D, Taha TE, Nielsen-Saines K, Celentano DD, Essex M, Hudelson SE, Redd AD, Fleming TR. Antiretroviral Therapy for the Prevention of HIV-1 Transmission. N Engl J Med. 2016 Jul 18.
Full-text Article: http://scholars.fhcrc.org/10051/

Dai JY, Tapsoba Jde D, Buas MF, Risch HA, Vaughan TL. Constrained Score Statistics Identify Genetic Variants Interacting with Multiple Risk Factors in Barrett's Esophagus. Am J Hum Genet. 2016 Aug 4;99(2):352-65.
Full-text Article: http://scholars.fhcrc.org/10155/

Deeks SG, Lewin SR, Ross AL, Ananworanich J, Benkirane M, Cannon P, Chomont N,Douek D, Lifson JD, Lo YR, Kuritzkes D, Margolis D, Mellors J, Persaud D, Tucker JD, Barre-Sinoussi F, Alter G, Auerbach J, Autran B, Barouch DH, Behrens G, Cavazzana M, Chen Z, Cohen EA, Corbelli GM, Eholie S, Eyal N, Fidler S, Garcia L, Grossman C, Henderson G, Henrich TJ, Jefferys R, Kiem HP, McCune J, Moodley K, Newman PA, Nijhuis M, Nsubuga MS, Ott M, Palmer S, Richman D, Saez-Cirion A, Sharp M, Siliciano J, Silvestri G, Singh J, Spire B, Taylor J, Tolstrup M, Valente S, van Lunzen J, Walensky R, Wilson I, Zack J. International AIDS Society global scientific strategy towards an HIV cure 2016. Nat Med. 2016 Aug;22(8):839-50.
Full-text Article: http://scholars.fhcrc.org/10046/

Dimitrov DT, Boily MC, Hallett TB, Albert J, Boucher C, Mellors JW, Pillay D, van de Vijver DA. How Much Do We Know about Drug Resistance Due to PrEP Use? Analysis of Experts' Opinion and Its Influence on the Projected Public Health Impact. PLoS One. 2016 Jul 8;11(7):e0158620.
Full-text Article: http://scholars.fhcrc.org/10025/

Feldstein LR, Ellis EM, Rowhani-Rahbar A, Halloran EM, Ellis BR. The First Reported Outbreak of Chikungunya in the U.S. Virgin Islands, 2014-2015. Am J Trop Med Hyg. 2016 Jul 11.
Full-text Article: http://scholars.fhcrc.org/10036/

Fu TJ, Carter JJ, Hughes JP, Feng Q, Hawes SE, Schwartz SM, Fu Xi L, Lasof T, Stern JE, Galloway DA, Koutsky LA, Winer RL. Re-Detection versus New Acquisition of High-Risk Human Papillomavirus in Mid-Adult Women. Int J Cancer. 2016 Jul 23.
Full-text Article: http://scholars.fhcrc.org/10095/

Gallo S, Woolfrey AE, Burroughs LM, Storer BE, Flowers ME, Hari P, Pulsipher MA, Heimfeld S, Kiem HP, Sandmaier BM, Storb R. Marrow grafts from HLA-identical siblings for severe aplastic anemia does limiting the number of transplanted marrow cells reduce the risk of chronic GvHD?. Bone Marrow Transplant. 2016 Aug 1.
Full-text Article: http://scholars.fhcrc.org/10148/

Gilada TI, Baheti AD, Green DE. How Can Evidence-Based Medicine Go Global?. J Am Coll Radiol. 2016 Jul 19.
Full-text Article: http://scholars.fhcrc.org/10102/

Herbst-Kralovetz MM, Pyles RB, Ratner AJ, Sycuro LK, Mitchell C. New Systems for Studying Intercellular Interactions in Bacterial Vaginosis. J Infect Dis. 2016 Aug 15;214 Suppl 1:S6-S13.
Full-text Article: http://scholars.fhcrc.org/10100/

Huang Y, Laber E. Personalized Evaluation of Biomarker Value A Cost-Benefit Perspective. Stat Biosci. 2016;8:43-65.
Full-text Article: http://scholars.fhcrc.org/10093/

Hughes JP, Emel L, Hanscom B, Zangeneh S. Design Issues in Transgender Studies. J Acquir Immune Defic Syndr. 2016 Aug 15;72 Suppl 3:S248-51.
Full-text Article: http://scholars.fhcrc.org/10057/

Jiang Y, Guarino P, Ma S,Simon S, Mayo MS, Raghavan R, Gajewski BJ. Bayesian accrual prediction for interim review of clinical studies open source R package and smartphone application. Trials. 2016 Jul 22;17(1):336.
Full-text Article: http://scholars.fhcrc.org/10098/

Karlsson EA, Hertz T, Johnson C, Mehle A, Krammer F, Schultz-Cherry S. Obesity Outweighs Protection Conferred by Adjuvanted Influenza Vaccination. MBio. 2016 Aug 2;7(4).
Full-text Article: http://scholars.fhcrc.org/10173/

Latkin CA, Van Tieu H, Fields S, Hanscom BS, Connor M, Hanscom B, Hussen SA, Scott HM, Mimiaga MJ, Wilton L, Magnus M, Chen I, Koblin BA. Social Network Factors as Correlates and Predictors of High Depressive Symptoms Among Black Men Who Have Sex with Men in HPTN 061. AIDS Behav. 2016 Aug 1.
Full-text Article: http://scholars.fhcrc.org/10149/

Meacham E, Orem J, Nakigudde G, Zujewski JA, Rao D. Exploring Stigma as a Barrier to Cancer Service Engagement with Breast Cancer Survivors in Kampala, Uganda. Psychooncology. 2016 Jul 16.
Full-text Article: http://scholars.fhcrc.org/10081/

Noguchi LM, Montgomery ET, Biggio JR, Hendrix CW, Bogen DL, Hillier SL, Dai JY, Piper JM, Marzinke MA, Dezzutti CS, Isaacs SK, Schwartz JL, Watts DH, Beigi RH. Detectable tenofovir levels in breastfeeding infants of mothers exposed to topical tenofovir. Antimicrob Agents Chemother. 2016 Jul 11.
Full-text Article: http://scholars.fhcrc.org/10030/

Rademeyer C, Korber B, Seaman MS, Giorgi EE, Thebus R, Robles A, Sheward DJ, Wagh K, Garrity J, Carey BR, Gao H, Greene KM, Tang H, Bandawe GP, Marais JC, Diphoko TE, Hraber P, Tumba N, Moore PL, Gray GE, Kublin J, McElrath MJ, Vermeulen M, Middelkoop K, Bekker LG, Hoelscher M, Maboko L, Makhema J, Robb ML, Abdool Karim S, Abdool Karim Q, Kim JH, Hahn BH, Gao F, Swanstrom R, Morris L, Montefiori DC, Williamson C. Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition Implications for Active and Passive Immunization. PLoS Pathog. 2016 Jul 19;12(7):e1005742.
Full-text Article: http://scholars.fhcrc.org/10068/

Ranganathan M, Heise L, Pettifor A, Silverwood RJ, Selin A, MacPhail C, Delany-Moretlwe S, Kahn K, Gomez-Olive FX, Hughes JP, Piwowar-Manning E, Laeyendecker O, Watts C. Transactional sex among young women in rural South Africa prevalence, mediators and association with HIV infection. J Int AIDS Soc. 2016 Jul 27;19(1):20749.
Full-text Article: http://scholars.fhcrc.org/10138/

Riddler SA, Husnik M, Gorbach PM, Levy L, Parikh U, Livant E, Pather A, Makanani B, Muhlanga F, Kasaro M, Martinson F, Elharrar V, Balkus JE. Long-term follow-up of HIV seroconverters in microbicide trials - rationale, study design, and challenges in MTN-015. HIV Clin Trials. 2016 Jul 28:1-8.
Full-text Article: http://scholars.fhcrc.org/10110/

Scherer EM, Smith RA, Gallego DF, Carter JJ, Wipf GC, Hoyos M, Stern M, Thurston T, Trinklein ND, Wald A, Galloway DA. A Single Human Papillomavirus Vaccine Dose Improves B Cell Memory in Previously Infected Subjects. EBioMedicine. 2016 Jun 29.
Full-text Article: http://scholars.fhcrc.org/10086/

Siskind RL, Andrasik M, Karuna ST, Broder GB, Collins C, Liu A, Lucas JP, Harper GW, Renzullo PO. Engaging Transgender People in NIH-Funded HIV/AIDS Clinical Trials Research. J Acquir Immune Defic Syndr. 2016 Aug 15;72 Suppl 3:S243-7.
Full-text Article: http://scholars.fhcrc.org/10056/

Srinivasan S, Munch MM, Sizova MV, Fiedler TL, Kohler CM, Hoffman NG, Liu C, Agnew KJ, Marrazzo JM, Epstein SS, Fredricks DN. More Easily Cultivated Than Identified Classical Isolation With Molecular Identification of Vaginal Bacteria. J Infect Dis. 2016 Aug 15;214 Suppl 1:S21-8.
Full-text Article: http://scholars.fhcrc.org/10099/

July

Arndt MB, Richardson BA, Ahmed T, Mahfuz M, Haque R, John-Stewart GC, Denno DM, Petri WA, Jr., Kosek M, Walson JL. Fecal Markers of Environmental Enteropathy and Subsequent Growth in Bangladeshi Children. Am J Trop Med Hyg. 2016 Jun 27.
Full-text Article: http://scholars.fhcrc.org/9962/

Ballen K, Ahn KW, Chen M, Abdel-Azim H, Ahmed I, Aljurf M, Antin J, Bhatt AS, Boeckh M, Chen G, Dandoy C, George B, Laughlin MJ, Lazarus HM, MacMillan ML, Margolis DA, Marks DI, Norkin M, Rosenthal J, Saad A, Savani B, Schouten HC, Storek J, Szabolcs P, Ustun C, Verneris MR, Waller EK, Weisdorf DJ, Williams KM, Wingard JR, Wirk B, Wolfs T, Young JH, Auletta J, Komanduri KV, Lindemans C, Riches ML. Infection Rates among Acute Leukemia Patients Receiving Alternative Donor Hematopoietic Cell Transplantation. Biol Blood Marrow Transplant. 2016 Jun 22. pii: S1083-8791(16)30147-1.
Full-text Article: http://scholars.fhcrc.org/9959/

Feldstein LR, Matrajt L, Halloran ME, Keitel WA, Longini IM, Jr. Extrapolating theoretical efficacy of inactivated influenza A/H5N1 virus vaccine from human immunogenicity studies. Vaccine. 2016 Jul 19;34(33):3796-802.
Full-text Article: http://scholars.fhcrc.org/9885/

Fisher L, Wakefield J, Bauer C, Self S. Time series modeling of pathogen-specific disease probabilities with subsampled data. Biometrics. 2016 Jul 5.
Full-text Article: http://scholars.fhcrc.org/9994/

Godfrey C, Tauscher G, Hunsberger S, Austin M, Scott L, Schouten JT, Luetkemeyer AF, Benson C, Coombs R, Swindells S. A survey of tuberculosis infection control practices at the NIH/NIAID/DAIDS-supported clinical trial sites in low and middle income countries. BMC Infect Dis. 2016 Jun 10;16(1):269.
Full-text Article: http://scholars.fhcrc.org/9892/

Inamoto Y, Martin PJ, Flowers ME, Lee SJ, Carpenter PA, Warren EH, Geraghty DE, Lee N, Boeckh MJ, Storer BE, Levine DM, Fan W, Zhao LP, Hansen JA. Genetic risk factors for sclerotic graft-versus-host disease. Blood. 2016 Jun 16.
Full-text Article: http://scholars.fhcrc.org/9944/

Magaret A, Angus DC, Adhikari NK, Banura P, Kissoon N, Lawler JV, Jacob ST. Corrigendum to "Design of a multi-arm randomized clinical trial with no control arm" [Contemporary Clinical Trials 46 (2016) 12-17]. Contemp Clin Trials. 2016 Jun 28. pii: S1551-7144(16)30092-1.
Full-text Article: http://scholars.fhcrc.org/9990/

Rossenkhan R, MacLeod IJ, Brumme ZL, Magaret C, Sebunya TK, Musonda R, Gashe BA, Novitsky V, Edlefsen P, Essex M. Transmitted / founder HIV-1 subtype C viruses show distinctive signature patterns in Vif, Vpr and Vpu that are under subsequent immune pressure during early infection. AIDS Res Hum Retroviruses. 2016 Jun 28.
Full-text Article: http://scholars.fhcrc.org/9975/

Safrit JT, Tomaras GD, Hanke T, deCamp AC, Voronin Y. The Landscape of Targeted Immune Responses in the HIV-1 Vaccine Field. AIDS Res Hum Retroviruses. 2016 Jun 27.
Full-text Article: http://scholars.fhcrc.org/9974/

Scheel JR, Peacock S, Orem J, Bugeza S, Muyinda Z, Porter PL, Wood WC, Comis RL, Lehman CD. Improving Breast Ultrasound Interpretation in Uganda Using a Condensed Breast Imaging Reporting and Data System. Acad Radiol. 2016 Jun 17. pii: S1076-6332(16)30097-6.
Full-text Article: http://scholars.fhcrc.org/9921/

Schiffer JT, Swan DA, Magaret A, Schacker TW, Wald A, Corey L. Mathematical Modeling Predicts that Increased HSV-2 Shedding in HIV-1 Infected Persons Is Due to Poor Immunologic Control in Ganglia and Genital Mucosa. PLoS One. 2016 Jun 10;11(6):e0155124.
Full-text Article: http://scholars.fhcrc.org/9891/

Sharma M, Farquhar C, Ying R, Krakowiak D, Kinuthia J, Osoti A, Asila V, Gone M, Mark J, Barnabas RV. Modeling the Cost-Effectiveness of Home-Based HIV Testing and Education (HOPE) for Pregnant Women and Their Male Partners in Nyanza Province, Kenya. J Acquir Immune Defic Syndr. 2016 Aug 1;72 Suppl 2:S174-80.
Full-text Article: http://scholars.fhcrc.org/9985/

Slichter CK, McDavid A, Miller HW, Finak G, Seymour BJ, McNevin JP, Diaz G, Czartoski JL, McElrath MJ, Gottardo R, Prlic M. Distinct activation thresholds of human conventional and innate-like memory T cells. JCI Insight. 2016 Jun 2;1(8).
Full-text Article: http://scholars.fhcrc.org/9938/

Song X, Schenk JM, Diep P, Murphy RA, Harris TB, Eiriksdottir G, Gudnason V, Casper C, Lampe JW, Neuhouser ML. Measurement of Circulating Phospholipid Fatty Acids Association between Relative Weight Percentage and Absolute Concentrations. J Am Coll Nutr. 2016 Jun 17:1-10.
Full-text Article: http://scholars.fhcrc.org/9918/

Wang X, Dai JY. TwoPhaseInd an R package for estimating gene-treatment interactions and discovering predictive markers in randomized clinical trials. Bioinformatics. 2016 Jul 4.
Full-text Article: http://scholars.fhcrc.org/9995/

June

Adachi K,Klausner JD,Xu J,Ank B,Bristow CC,Morgado MG,Watts DH,Weir F,Persing D,Mofenson LM,Veloso VG,Pilotto JH,Joao E,Gray G,Theron G,Santos B,Fonseca R,Kreitchmann R,Pinto J,Mussi-Pinhata MM,Ceriotto M,Machado DM,Bryson YJ,Grinsztejn B,Bastos FI,Siberry G,Nielsen-Saines K. (2016). Chlamydia trachomatis and Neisseria gonorrhoeae in HIV-infected Pregnant Women and Adverse Infant Outcomes. Pediatr Infect Dis J.
Full-text Article: http://scholars.fhcrc.org/9670/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27164464/?otool=fhcrclib

Asturias EJ,Bandyopadhyay AS,Self S,Rivera L,Saez-Llorens X,Lopez E,Melgar M,Gaensbauer JT,Weldon WC,Oberste MS,Borate BR,Gast C,Clemens R,Orenstein W,G MO,Jimeno J,Clemens SA,Ward J,Ruttimann R. (2016). Humoral and intestinal immunity induced by new schedules of bivalent oral poliovirus vaccine and one or two doses of inactivated poliovirus vaccine in Latin American infants: an open-label randomised controlled trial. Lancet.
Full-text Article: http://scholars.fhcrc.org/9730/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27212429/?otool=fhcrclib

Bryan A,Cook L,Atienza EE,Kuypers J,Cent A,Baird GS,Coombs RW,Jerome KR,Wener MH,Butler-Wu SM. (2016). Bloodborne Viral Pathogen Contamination in the Era of Laboratory Automation. Clin Chem.
Full-text Article: http://scholars.fhcrc.org/9717/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27197676/?otool=fhcrclib

Chemaly RF,Aitken SL,Wolfe CR,Jain R,Boeckh MJ. (2016). Aerosolized ribavirin: the most expensive drug for pneumonia. Transpl Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9733/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27214684/?otool=fhcrclib

Chen L,Cook LS,Tang MC,Porter PL,Hill DA,Wiggins CL,Li CI. (2016). Body mass index and risk of luminal, HER2-overexpressing, and triple negative breast cancer. Breast Cancer Res Treat.
Full-text Article: http://scholars.fhcrc.org/9739/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27220749/?otool=fhcrclib

Chow SK,Atienza EE,Cook L,Prince H,Slev P,Lape-Nixon M,Jerome KR. (2016). Comparison of enzyme immunoassays for detection of antibodies to hepatitis D virus in serum. Clin Vaccine Immunol.
Full-text Article: http://scholars.fhcrc.org/9868/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27280621/?otool=fhcrclib

Chu HY,Katz J,Tielsch J,Khatry SK,Shrestha L,LeClerq SC,Magaret A,Kuypers J,Steinhoff M,Englund JA. (2016). Respiratory syncytial virus infection in infants in rural Nepal. J Infect.
Full-text Article: http://scholars.fhcrc.org/9802/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27241525/?otool=fhcrclib

Colombara DV,Manhart LE,Carter JJ,Hawes SE,Weiss NS,Hughes JP,Qiao YL,Taylor PR,Smith JS,Galloway DA. (2016). Absence of an association of human polyomavirus and papillomavirus infection with lung cancer in China: a nested case-control study. BMC Cancer, 16(1), 342. PMCID: PMC4888628.
Full-text Article: http://scholars.fhcrc.org/9813/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27246610/?otool=fhcrclib

Cosgrove CA,Lacey CJ,Cope AV,Bartolf A,Morris G,Yan C,Baden S,Cole T,Carter D,Brodnicki E,Shen X,Joseph S,DeRosa SC,Peng L,Yu X,Ferrari G,Seaman M,Montefiori DC,Frahm N,Tomaras GD,Stohr W,McCormack S,Shattock RJ. (2016). Comparative Immunogenicity of HIV-1 gp140 Vaccine Delivered by Parenteral, and Mucosal Routes in Female Volunteers; MUCOVAC2, A Randomized Two Centre Study. PLoS One, 11(5), e0152038. PMCID: PMC4861263.
Full-text Article: http://scholars.fhcrc.org/9656/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27159166/?otool=fhcrclib

Hladish TJ,Pearson CA,Chao DL,Rojas DP,Recchia GL,Gomez-Dantes H,Halloran ME,Pulliam JR,Longini IM. (2016). Projected Impact of Dengue Vaccination in Yucatan, Mexico. PLoS Negl Trop Dis, 10(5), e0004661.
Full-text Article: http://scholars.fhcrc.org/9740/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27227883/?otool=fhcrclib

Hughes SM,Shu Z,Levy CN,Ferre AL,Hartig H,Fang C,Lentz G,Fialkow M,Kirby AC,Adams Waldorf KM,Veazey RS,Germann A,von Briesen H,McElrath MJ,Dezzutti CS,Sinclair E,Baker CA,Shacklett BL,Gao D,Hladik F. (2016). Cryopreservation of Human Mucosal Leukocytes. PLoS One, 11(5), e0156293.
Full-text Article: http://scholars.fhcrc.org/9738/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27232996/?otool=fhcrclib

Jennings L,Pettifor A,Hamilton E,Ritchwood TD,Xavier Gomez-Olive F,MacPhail C,Hughes J,Selin A,Kahn K. (2016). Economic Resources and HIV Preventive Behaviors Among School-Enrolled Young Women in Rural South Africa (HPTN 068). AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/9833/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27260180/?otool=fhcrclib

Kasaro MP,Husnik MJ,Chi BH,Reid C,Magure T,Makanani B,Tembo T,Ramjee G,Maslankowski L,Rabe L,Brad Guffey M. (2016). Impact of targeted counseling on reported vaginal hygiene practices and bacterial vaginosis: the HIV Prevention Trials Network 035 study. Int J STD AIDS.
Full-text Article: http://scholars.fhcrc.org/9841/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27277555/?otool=fhcrclib

Kasaro MP,Husnik MJ,Chi BH,Reid C,Magure T,Makanani B,Tembo T,Ramjee G,Maslankowski L,Rabe L,Brad Guffey M. (2016). Impact of targeted counseling on reported vaginal hygiene practices and bacterial vaginosis: the HIV Prevention Trials Network 035 study. Int J STD AIDS.
Full-text Article: http://scholars.fhcrc.org/9841/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27277555/?otool=fhcrclib

Kerr KF,Brown MD,Zhu K,Janes H. (2016). Assessing the Clinical Impact of Risk Prediction Models With Decision Curves: Guidance for Correct Interpretation and Appropriate Use. J Clin Oncol.
Full-text Article: http://scholars.fhcrc.org/9796/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27247223/?otool=fhcrclib

McDavid A,Finak G,Gottardo R. (2016). The contribution of cell cycle to heterogeneity in single-cell RNA-seq data. Nat Biotechnol, 34(6), 591-593.
Full-text Article: http://scholars.fhcrc.org/9871/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27281413/?otool=fhcrclib

Noecker C,Eng A,Srinivasan S,Theriot CM,Young VB,Jansson JK,Fredricks DN,Borenstein E. (2016). Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. mSystems, 1(1). PMCID: PMC4883586.
Full-text Article: http://scholars.fhcrc.org/9784/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27239563/?otool=fhcrclib

Ramani S,Mamani N,Villena R,Bandyopadhyay AS,Gast C,Sato A,Laucirica D,Clemens R,Estes MK,O'Ryan ML. (2016). Rotavirus Serum IgA Immune Response in Children Receiving Rotarix(R) Co-Administered with bOPV or IPV. Pediatr Infect Dis J.
Full-text Article: http://scholars.fhcrc.org/9818/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27254033/?otool=fhcrclib

Roberts ST,Khanna AS,Barnabas RV,Goodreau SM,Baeten JM,Celum C,Cassels S. (2016). Estimating the impact of universal antiretroviral therapy for HIV serodiscordant couples through home HIV testing: insights from mathematical models. J Int AIDS Soc, 19(1), 20864. PMCID: PMC4865806.
Full-text Article: http://scholars.fhcrc.org/9684/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27174911/?otool=fhcrclib

Schoofs T,Klein F,Braunschweig M,Kreider EF,Feldmann A,Nogueira L,Oliveira T,Lorenzi JC,Parrish EH,Learn GH,West AP, Jr.,Bjorkman PJ,Schlesinger SJ,Seaman MS,Czartoski J,McElrath MJ,Pfeifer N,Hahn BH,Caskey M,Nussenzweig MC. (2016). HIV-1 therapy with monoclonal antibody 3BNC117 elicits host immune responses against HIV-1. Science, 352(6288), 997-1001.
Full-text Article: http://scholars.fhcrc.org/9709/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27199429/?otool=fhcrclib

Stone D,Niyonzima N,Jerome KR. (2016). Genome editing and the next generation of antiviral therapy. Hum Genet.
Full-text Article: http://scholars.fhcrc.org/9846/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27272125/?otool=fhcrclib

Vindigni SM,Taylor J,Quilter LA,Hyun TS,Liu C,Rosinski SL,Rakita RM,Fredricks DN,Damman CJ. (2016). Tropheryma whipplei infection (Whipple's disease) in a patient after liver transplantation. Transpl Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9834/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27258480/?otool=fhcrclib

Wamalwa D,Benki-Nugent S,Langat A,Tapia K,Ngugi E,Moraa H,Maleche-Obimbo E,Otieno V,Inwani I,Richardson BA,Chohan B,Overbaugh J,John-Stewart GC. (2016). Treatment interruption after 2-year antiretroviral treatment (ART) initiated during acute/early HIV in infancy: a randomized trial. Aids.
Full-text Article: http://scholars.fhcrc.org/9663/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27177316/?otool=fhcrclib

Ying R,Sharma M,Celum C,Baeten JM,van Rooyen H,Hughes JP,Garnett G,Barnabas RV. (2016). Home testing and counselling to reduce HIV incidence in a generalised epidemic setting: a mathematical modelling analysis. Lancet HIV, 3(6), e275-82.
Full-text Article: http://scholars.fhcrc.org/9788/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27240790/?otool=fhcrclib

May

Balkus JE,Brown ER,Hillier SL,Coletti A,Ramjee G,Mgodi N,Makanani B,Reid C,Martinson F,Soto-Torres L,Abdool Karim SS,Chirenje ZM. (2016). Corrigendum to "oral and injectable contraceptive use and HIV acquisition risk among women in four African countries: a secondary analysis of data from a microbicide trial" [contraception 2016; 93 (1): 25-31]. Contraception 
Full-text Article: http://scholars.fhcrc.org/9474/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27085419/?otool=fhcrclib

Barnabas RV,van Rooyen H,Tumwesigye E,Brantley J,Baeten JM,van Heerden A,Turyamureeba B,Joseph P,Krows M,Thomas KK,Schaafsma TT,Hughes JP,Celum C. (2016). Uptake of antiretroviral therapy and male circumcision after community-based HIV testing and strategies for linkage to care versus standard clinic referral: a multisite, open-label, randomised controlled trial in South Africa and Uganda. Lancet HIV, 3(5), e212-20.
Full-text Article: http://scholars.fhcrc.org/9547/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27126488/?otool=fhcrclib

Buser JR,Zhang X,Byrnes SA,Ladd PD,Heiniger EK,Wheeler MD,Bishop JD,Englund JA,Lutz B,Weigl BH,Yager P. (2016). A disposable chemical heater and dry enzyme preparation for lysis and extraction of DNA and RNA from microorganisms. Analytical Methods, 8(14), 2880-2886.
Full-text Article: http://scholars.fhcrc.org/9578/
PubMed Record: N/A

Chao DL,Dimitrov DT. (2016). Seasonality and the effectiveness of mass vaccination. Math Biosci Eng, 13(2), 249-59.
Full-text Article: http://scholars.fhcrc.org/9506/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27105983/?otool=fhcrclib

Finak G,Gottardo R. (2016). Promises and Pitfalls of High-Throughput Biological Assays. Methods Mol Biol, 1415, 225-43.
Full-text Article: http://scholars.fhcrc.org/9555/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27115636/?otool=fhcrclib

Gray GE,Mayer KH,Elizaga ML,Bekker LG,Allen M,Morris L,Montefiori D,De Rosa SC,Sato A,Gu N,Tomaras GD,Tucker T,Barnett SW,Mkhize NN,Shen X,Downing K,Williamson C,Pensiero M,Corey L,Williamson AL. (2016). Subtype C gp140 vaccine boosts immune responses primed by SAAVI DNA-C2 and MVA-C HIV vaccine after more than a two year gap (HVTN 073E/SAAVI 102). Clin Vaccine Immunol 
Full-text Article: http://scholars.fhcrc.org/9511/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27098021/?otool=fhcrclib

Hayes PJ,Cox JH,Coleman AR,Fernandez N,Bergin PJ,Kopycinski JT,Nitayaphan S,Pitisuttihum P,de Souza M,Duerr A,Morgan C,Gilmour JW. (2016). Adenovirus based HIV-1 vaccine candidates tested in efficacy trials elicit CD8 T-cells with limited breadth of HIV-1 inhibition. Aids 
Full-text Article: http://scholars.fhcrc.org/9514/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27088318/?otool=fhcrclib

Imholte G,Gottardo R. (2016). Bayesian hierarchical modeling for subject-level response classification in peptide microarray immunoassays. Biometrics 
Full-text Article: http://scholars.fhcrc.org/9489/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27061097/?otool=fhcrclib

Kenah E,Britton T,Halloran ME,Longini IM, Jr.. (2016). Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees. PLoS Comput Biol, 12(4), e1004869.
Full-text Article: http://scholars.fhcrc.org/9495/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27070316/?otool=fhcrclib

Lal M,Jarrahian C,Zhu C,Hosken NA,McClurkan CL,Koelle DM,Saxon E,Roehrig A,Zehrung D,Chen D. (2016). Stability of live attenuated rotavirus vaccine with selected preservatives and primary containers. Vaccine 
Full-text Article: http://scholars.fhcrc.org/9496/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27085171/?otool=fhcrclib

Lhomme E,Richert L,Moodie Z,Pasin C,Kalams SA,Morgan C,Self S,De Rosa SC,Thiebaut R. (2016). Early CD4+ T Cell Responses Are Associated with Subsequent CD8+ T Cell Responses to an rAd5-Based Prophylactic Prime-Boost HIV Vaccine Strategy. PLoS One, 11(4), e0152952.
Full-text Article: http://scholars.fhcrc.org/9569/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27124598/?otool=fhcrclib

Milligan ID,Gibani MM,Sewell R,Clutterbuck EA,Campbell D,Plested E,Nuthall E,Voysey M,Silva-Reyes L,McElrath MJ,De Rosa SC,Frahm N,Cohen KW,Shukarev G,Orzabal N,van Duijnhoven W,Truyers C,Bachmayer N,Splinter D,Samy N,Pau MG,Schuitemaker H,Luhn K,Callendret B,Van Hoof J,Douoguih M,Ewer K,Angus B,Pollard AJ,Snape MD. (2016). Safety and Immunogenicity of Novel Adenovirus Type 26- and Modified Vaccinia Ankara-Vectored Ebola Vaccines: A Randomized Clinical Trial. Jama, 315(15), 1610-23.
Full-text Article: http://scholars.fhcrc.org/9519/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27092831/?otool=fhcrclib

Milman N,Zhu J,Johnston C,Cheng A,Magaret A,Koelle DM,Huang ML,Jin L,Klock A,Layton ED,Corey L. (2016). In Situ Detection of Regulatory T Cells in Human Genital Herpes Simplex Virus Type 2 (HSV-2) Reactivation and Their Influence on Spontaneous HSV-2 Reactivation. J Infect Dis 
Full-text Article: http://scholars.fhcrc.org/9562/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27117511/?otool=fhcrclib

Moodley N,Gray G,Bertram M. (2016). Projected economic evaluation of the national implementation of a hypothetical HIV vaccination program among adolescents in South Africa, 2012. BMC Public Health, 16(1), 330. PMCID: PMC4832469.
Full-text Article: http://scholars.fhcrc.org/9465/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27079900/?otool=fhcrclib

Nghiem PT,Bhatia S,Lipson EJ,Kudchadkar RR,Miller NJ,Annamalai L,Berry S,Chartash EK,Daud A,Fling SP,Friedlander PA,Kluger HM,Kohrt HE,Lundgren L,Margolin K,Mitchell A,Olencki T,Pardoll DM,Reddy SA,Shantha EM,Sharfman WH,Sharon E,Shemanski LR,Shinohara MM,Sunshine JC,Taube JM,Thompson JA,Townson SM,Yearley JH,Topalian SL,Cheever MA. (2016). PD-1 Blockade with Pembrolizumab in Advanced Merkel-Cell Carcinoma. N Engl J Med 
Full-text Article: http://scholars.fhcrc.org/9523/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27093365/?otool=fhcrclib

Ojikutu BO,Pathak S,Srithanaviboonchai K,Limbada M,Friedman R,Li S,Mimiaga MJ,Mayer KH,Safren SA. (2016). Community Cultural Norms, Stigma and Disclosure to Sexual Partners among Women Living with HIV in Thailand, Brazil and Zambia (HPTN 063). PLoS One, 11(5), e0153600.
Full-text Article: http://scholars.fhcrc.org/9619/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27152618/?otool=fhcrclib

Roychoudhury P,De Silva Feelixge HS,Pietz HL,Stone D,Jerome KR,Schiffer JT. (2016). Pharmacodynamics of anti-HIV gene therapy using viral vectors and targeted endonucleases. J Antimicrob Chemother 
Full-text Article: http://scholars.fhcrc.org/9522/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27090632/?otool=fhcrclib

Seo S,Gooley TA,Kuypers JM,Stednick Z,Jerome KR,Englund JA,Boeckh M. (2016). Human Metapneumovirus Infections following Hematopoietic Cell Transplantation: Factors Associated with Disease Progression. Clin Infect Dis 
Full-text Article: http://scholars.fhcrc.org/9603/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27143659/?otool=fhcrclib

Wilson KS,Deya R,Yuhas K,Simoni J,Vander Stoep A,Shafi J,Jaoko W,Hughes JP,Richardson BA,McClelland RS. (2016). A Prospective Cohort Study of Intimate Partner Violence and Unprotected Sex in HIV-Positive Female Sex Workers in Mombasa, Kenya. AIDS Behav 
Full-text Article: http://scholars.fhcrc.org/9532/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27094785/?otool=fhcrclib

Xi LF,Schiffman M,Koutsky LA,Hughes JP,Hulbert A,Shen Z,Galloway DA,Kiviat NB. (2016). Variant-Specific Persistence of Infections with Human Papillomavirus Types 31, 33, 45, 56 and 58 and Risk of Cervical Intraepithelial Neoplasia. Int J Cancer 
Full-text Article: http://scholars.fhcrc.org/9566/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27121353/?otool=fhcrclib

Zurawski G,Zurawski S,Flamar AL,Richert L,Wagner R,Tomaras GD,Montefiori DC,Roederer M,Ferrari G,Lacabaratz C,Bonnabau H,Klucar P,Wang Z,Foulds KE,Kao SF,Yates NL,LaBranche C,Jacobs BL,Kibler K,Asbach B,Kliche A,Salazar A,Reed S,Self S,Gottardo R,Galmin L,Weiss D,Cristillo A,Thiebaut R,Pantaleo G,Levy Y. (2016). Targeting HIV-1 Env gp140 to LOX-1 Elicits Immune Responses in Rhesus Macaques. PLoS One, 11(4), e0153484.
Full-text Article: http://scholars.fhcrc.org/9468/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27077384/?otool=fhcrclib

April

Chu HY,Katz J,Tielsch J,Khatry SK,Shrestha L,LeClerq SC,Magaret A,Kuypers J,Steinhoff MC,Englund JA. (2016). Clinical Presentation and Birth Outcomes Associated with Respiratory Syncytial Virus Infection in Pregnancy. PLoS One, 11(3), e0152015.
Full-text Article: http://scholars.fhcrc.org/9341/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27031702/?otool=fhcrclib

Cybis GB,Sinsheimer JS,Bedford T,Mather AE,Lemey P,Suchard MA. (2015). ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. Ann Appl Stat, 9(2), 969-991. PMCID: PMC4820077.
Full-text Article: http://scholars.fhcrc.org/9393/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27053974/?otool=fhcrclib

Edlefsen PT,Birkmann A,Huang ML,Magaret CA,Kee JJ,Diem K,Goldner T,Timmler B,Stoelben S,Ruebsamen-Schaeff H,Zimmermann H,Warren T,Wald A,Corey L. (2016). No evidence of resistance of HSV-2 to pritelivir following four weeks of daily therapy. J Infect Dis 
Full-text Article: http://scholars.fhcrc.org/9401/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27056950/?otool=fhcrclib

Fang LQ,Yang Y,Jiang JF,Yao HW,Kargbo D,Li XL,Jiang BG,Kargbo B,Tong YG,Wang YW,Liu K,Kamara A,Dafae F,Kanu A,Jiang RR,Sun Y,Sun RX,Chen WJ,Ma MJ,Dean NE,Thomas H,Longini IM, Jr.,Halloran ME,Cao WC. (2016). Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/9344/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27035948/?otool=fhcrclib

Fisher CE,Alexander J,Bhattacharya R,Rakita RM,Kirby KA,Boeckh M,Limaye AP. (2016). Sensitivity of blood and tissue diagnostics for gastrointestinal cytomegalovirus disease in solid organ transplant recipients. Transpl Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9284/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27004439/?otool=fhcrclib

Fong Y,Yin S,Huang Y. (2016). Combining biomarkers linearly and nonlinearly for classification using the area under the ROC curve. Stat Med 
Full-text Article: http://scholars.fhcrc.org/9405/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27058981/?otool=fhcrclib

Freeman S,Okoroafor NO,Gast CM,Koval M,Nowowiejski D,O'Connor E,Harrington RD,Parks JW,Fang FC. (2016). Crowdsourced Data Indicate Widespread Multidrug Resistance in Skin Flora of Healthy Young Adults. J Microbiol Biol Educ, 17(1), 172-82. PMCID: PMC4798803.
Full-text Article: http://scholars.fhcrc.org/9407/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27047615/?otool=fhcrclib

Fu R,Gilbert PB. (2016). Joint modeling of longitudinal and survival data with the Cox model and two-phase sampling. Lifetime Data Anal.
Full-text Article: http://scholars.fhcrc.org/9286/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27007859/?otool=fhcrclib

Gabriel EE,Daniels MJ,Halloran ME. (2016). Comparing biomarkers as trial level general surrogates. Biometrics.
Full-text Article: http://scholars.fhcrc.org/9345/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27038302/?otool=fhcrclib

Gilbert PB,Janes HE,Huang Y. (2016). Power/sample size calculations for assessing correlates of risk in clinical efficacy trials. Stat Med.
Full-text Article: http://scholars.fhcrc.org/9348/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27037797/?otool=fhcrclib

Harvey WT,Benton DJ,Gregory V,Hall JP,Daniels RS,Bedford T,Haydon DT,Hay AJ,McCauley JW,Reeve R. (2016). Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses. PLoS Pathog, 12(4), e1005526.
Full-text Article: http://scholars.fhcrc.org/9411/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27057693/?otool=fhcrclib

Humbert O,Gisch DW,Wohlfahrt ME,Adams AB,Greenberg PD,Schmitt TM,Trobridge GD,Kiem HP. (2016). Development of 3 Generation Cocal Envelope Producer Cell Lines for Robust Lentiviral Gene Transfer into Hematopoietic Stem Cells and T Cells. Mol Ther 
Full-text Article: http://scholars.fhcrc.org/9413/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27058824/?otool=fhcrclib

Jardine JG,Kulp DW,Havenar-Daughton C,Sarkar A,Briney B,Sok D,Sesterhenn F,Ereno-Orbea J,Kalyuzhniy O,Deresa I,Hu X,Spencer S,Jones M,Georgeson E,Adachi Y,Kubitz M,deCamp AC,Julien JP,Wilson IA,Burton DR,Crotty S,Schief WR. (2016). HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen. Science, 351(6280), 1458-63.
Full-text Article: http://scholars.fhcrc.org/9290/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27013733/?otool=fhcrclib

Kyle JE,Zhang X,Weitz KK,Monroe ME,Ibrahim YM,Moore RJ,Cha J,Sun XF,Lovelace ES,Wagoner J,Polyak SJ,Metz TO,Dey SK,Smith RD,Burnum-Johnson KE,Baker ES. (2016). Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. Analyst, 141(5), 1649-1659.
Full-text Article: http://scholars.fhcrc.org/9320/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26734689/?otool=fhcrclib

Mugwanya K,Baeten J,Celum C,Donnell D,Nickolas T,Mugo N,Branch A,Tappero J,Kiarie J,Ronald A,Yin M,Wyatt C. (2016). Low risk of Proximal Tubular Dysfunction Associated with Emtricitabine-Tenofovir Disoproxil Fumarate Pre-Exposure Prophylaxis in Men and Women. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9359/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27029778/?otool=fhcrclib

Peng X,Li SS,Gilbert PB,Geraghty DE,Katze MG. (2016). FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-gamma Receptors in Human B Cells. PLoS One, 11(3), e0152425.
Full-text Article: http://scholars.fhcrc.org/9303/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27015273/?otool=fhcrclib

Pepe MS,Janes H,Li CI,Bossuyt PM,Feng Z,Hilden J. (2016). Early-Phase Studies of Biomarkers: What Target Sensitivity and Specificity Values Might Confer Clinical Utility?. Clin Chem.
Full-text Article: http://scholars.fhcrc.org/9307/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27001493/?otool=fhcrclib

Radtke S,Haworth KG,Kiem HP. (2016). The frequency of multipotent CD133+CD45RA-CD34+ hematopoietic stem cells is not increased in fetal liver compared to adult stem cell sources. Exp Hematol.
Full-text Article: http://scholars.fhcrc.org/9308/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27016273/?otool=fhcrclib

Ramanathan M,Teira P,Battiwalla M,Barrett J,Ahn KW,Chen M,Green J,Laughlin M,Lazarus HM,Marks D,Saad A,Seftel M,Saber W,Savani B,Waller E,Wingard J,Auletta JJ,Lindemans CA,Boeckh M,Riches ML. (2016). Impact of early CMV reactivation in cord blood stem cell recipients in the current era. Bone Marrow Transplant 
Full-text Article: http://scholars.fhcrc.org/9412/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27042847/?otool=fhcrclib

Ritchwood TD,Hughes JP,Jennings L,MacPhail C,Williamson B,Selin A,Kahn K,Gomez-Olive FX,Pettifor A. (2016). Characteristics of Age-discordant Partnerships Associated with HIV Risk Among Young South African Women (HPTN 068). J Acquir Immune Defic Syndr 
Full-text Article: http://scholars.fhcrc.org/9211/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26977748/?otool=fhcrclib

Scharf L,West AP,Sievers SA,Chen C,Jiang S,Gao H,Gray MD,McGuire AT,Scheid JF,Nussenzweig MC,Stamatatos L,Bjorkman PJ. (2016). Structural basis for germline antibody recognition of HIV-1 immunogens. Elife, 5.
Full-text Article: http://scholars.fhcrc.org/9281/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26997349/?otool=fhcrclib

Shu Z,Hughes SM,Fang C,Hou Z,Zhao G,Fialkow M,Lentz G,Hladik F,Gao D. (2016). Determination of the Membrane Permeability to Water of Human Vaginal Mucosal Immune Cells at Subzero Temperatures Using Differential Scanning Calorimetry. Biopreserv Biobank.
Full-text Article: http://scholars.fhcrc.org/9220/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26977578/?otool=fhcrclib

Shu Z,Hughes SM,Fang C,Huang J,Fu B,Zhao G,Fialkow M,Lentz G,Hladik F,Gao D. (2016). A Study of the Osmotic Characteristics, Water Permeability, and Cryoprotectant Permeability of Human Vaginal Immune Cells. Cryobiology.
Full-text Article: http://scholars.fhcrc.org/9221/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26976225/?otool=fhcrclib

Smith TC,Kim JH,Gast CM,Benefield RJ. (2016). Pharmacokinetics of acyclovir in a morbidly obese patient with renal impairment. Int J Antimicrob Agents.
Full-text Article: http://scholars.fhcrc.org/9293/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27006000/?otool=fhcrclib

Soerens AG,Da Costa A,Lund JM. (2016). Regulatory T cells are essential to promote proper CD4 T-cell priming upon mucosal infection. Mucosal Immunol.
Full-text Article: http://scholars.fhcrc.org/9294/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27007674/?otool=fhcrclib

Spragg C,De Silva Feelixge H,Jerome KR. (2016). Cell and gene therapy strategies to eradicate HIV reservoirs. Curr Opin HIV AIDS.
Full-text Article: http://scholars.fhcrc.org/9333/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27031009/?otool=fhcrclib

Sun Y,Qian X,Shou Q,Gilbert PB. (2016). Analysis of two-phase sampling data with semiparametric additive hazards models. Lifetime Data Anal.
Full-text Article: http://scholars.fhcrc.org/9228/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26995733/?otool=fhcrclib

Tang H,Partyka K,Hsueh P,Sinha JY,Kletter D,Zeh H,Huang Y,Brand RE,Haab BB. (2016). Glycans related to the CA19-9 antigen are increased in distinct subsets of pancreatic cancers and improve diagnostic accuracy over CA19-9. Cell Mol Gastroenterol Hepatol, 2(2), 210-221.e15. PMCID: PMC4792034.
Full-text Article: http://scholars.fhcrc.org/9304/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26998508/?otool=fhcrclib  

Tjernlund A,Burgener A,Lindvall JM,Peng T,Zhu J,Ohrmalm L,Picker LJ,Broliden K,McElrath MJ,Corey L. (2016). In Situ Staining and Laser Capture Microdissection of Lymph Node Residing SIV Gag-Specific CD8+ T cells-A Tool to Interrogate a Functional Immune Response Ex Vivo. PLoS One, 11(3), e0149907.
Full-text Article: http://scholars.fhcrc.org/9243/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26986062/?otool=fhcrclib  

Winer RL,Hughes JP,Feng Q,Stern JE,Xi LF,Koutsky LA. (2016). Incident Detection of High-Risk Human Papillomavirus Infections in a Cohort of High-Risk Women Aged 25-65 Years. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9306/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27009602/?otool=fhcrclib 

March

Aghaeepour N,Chattopadhyay P,Chikina M,Dhaene T,Van Gassen S,Kursa M,Lambrecht BN,Malek M,McLachlan GJ,Qian Y,Qiu P,Saeys Y,Stanton R,Tong D,Vens C,Walkowiak S,Wang K,Finak G,Gottardo R,Mosmann T,Nolan GP,Scheuermann RH,Brinkman RR. (2016). A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry Part A, 89A(1), 16-21.
Full-text Article: http://scholars.fhcrc.org/8147/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26447924/?otool=fhcrclib

Asbach B,Kliche A,Kostler J,Perdiguero B,Esteban M,Jacobs BL,Montefiori DC,LaBranche CC,Yates NL,Tomaras GD,Ferrari G,Foulds KE,Roederer M,Landucci G,Forthal DN,Seaman MS,Hawkins N,Self SG,Sato A,Gottardo R,Phogat S,Tartaglia J,Barnett SW,Burke B,Cristillo AD,Weiss DE,Francis J,Galmin L,Ding S,Heeney JL,Pantaleo G,Wagner R. (2016). Streamlining Heterologous DNA-Prime and NYVAC/Protein-Boost HIV Vaccine Regimens in Rhesus Macaques by Employing Improved Antigens. J Virol.
Full-text Article: http://scholars.fhcrc.org/8853/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26865719/?otool=fhcrclib

Baeten JM,Palanee-Phillips T,Brown ER,Schwartz K,Soto-Torres LE,Govender V,Mgodi NM,Matovu Kiweewa F,Nair G,Mhlanga F,Siva S,Bekker LG,Jeenarain N,Gaffoor Z,Martinson F,Makanani B,Pather A,Naidoo L,Husnik M,Richardson BA,Parikh UM,Mellors JW,Marzinke MA,Hendrix CW,van der Straten A,Ramjee G,Chirenje ZM,Nakabiito C,Taha TE,Jones J,Mayo A,Scheckter R,Berthiaume J,Livant E,Jacobson C,Ndase P,White R,Patterson K,Germuga D,Galaska B,Bunge K,Singh D,Szydlo DW,Montgomery ET,Mensch BS,Torjesen K,Grossman CI,Chakhtoura N,Nel A,Rosenberg Z,McGowan I,Hillier S. (2016). Use of a Vaginal Ring Containing Dapivirine for HIV-1 Prevention in Women. N Engl J Med.
Full-text Article: http://scholars.fhcrc.org/8960/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26900902/?otool=fhcrclib

Balkus JE,Brown E,Palanee T,Nair G,Gafoor Z,Zhang J,Richardson BA,Chirenje ZM,Marrazzo JM,Baeten JM. (2016). An Empiric HIV Risk Scoring Tool to Predict HIV-1 Acquisition in African Women. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8942/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26918545/?otool=fhcrclib

Balkus JE,Manhart LE,Lee J,Anzala O,Kimani J,Schwebke J,Shafi J,Rivers C,Kabare E,McClelland RS. (2016). Periodic presumptive treatment for vaginal infections may reduce the incidence of bacterial sexually transmitted infections. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8966/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908758/?otool=fhcrclib

Bender Ignacio RA,Goldman JD,Magaret AS,Selke S,Huang ML,Gantt S,Johnston C,Phipps WT,Schiffer JT,Zuckerman RA,McClelland RS,Celum C,Corey L,Wald A,Casper C. (2016). Patterns of human herpesvirus-8 oral shedding among diverse cohorts of human herpesvirus-8 seropositive persons. Infect Agent Cancer, 11, 7. PMCID: PMC4748452.
Full-text Article: http://scholars.fhcrc.org/8854/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26865856/?otool=fhcrclib

Boeckh M,Gilbert PB. (2016). Search continues for a CMV vaccine for transplant recipients. Lancet Haematol, 3(2), e58-9.
Full-text Article: http://scholars.fhcrc.org/8855/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26853642/?otool=fhcrclib

Bosire R,Betz B,Aluisio A,Hughes JP,Nduati R,Kiarie J,Chohan BH,Merkel M,Lohman-Payne B,John-Stewart G,Farquhar C. (2016). High Rates of Exclusive Breastfeeding in Both Arms of a Peer Counseling Study Promoting EBF Among HIV-Infected Kenyan Women. Breastfeed Med.
Full-text Article: http://scholars.fhcrc.org/8903/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26885769/?otool=fhcrclib

Coley RY,Brown ER. (2016). Estimating effectiveness in HIV prevention trials with a Bayesian hierarchical compound Poisson frailty model. Stat Med.
Full-text Article: http://scholars.fhcrc.org/8873/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26869051/?otool=fhcrclib

Dean NE,Halloran ME,Yang Y,Longini IM. (2016). The transmissibility and pathogenicity of Ebola virus: a systematic review and meta-analysis of household secondary attack rate and asymptomatic infection. Clin Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8991/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26932131/?otool=fhcrclib

Dimitrov DT,BR MA,Donnell D. (2016). PrEP adherence patterns strongly impact individual HIV risk and observed efficacy in randomized clinical trials. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/9190/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26990823/?otool=fhcrclib

Dimitrov DT,Kiem HP,Jerome KR,Johnston C,Schiffer JT. (2016). A curative regimen would decrease HIV prevalence but not HIV incidence unless targeted to an ART-naive population. Sci Rep, 6, 22183.
Full-text Article: http://scholars.fhcrc.org/8950/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908162/?otool=fhcrclib

Finak G,Langweiler M,Jaimes M,Malek M,Taghiyar J,Korin Y,Raddassi K,Devine L,Obermoser G,Pekalski ML,Pontikos N,Diaz A,Heck S,Villanova F,Terrazzini N,Kern F,Qian Y,Stanton R,Wang K,Brandes A,Ramey J,Aghaeepour N,Mosmann T,Scheuermann RH,Reed E,Palucka K,Pascual V,Blomberg BB,Nestle F,Nussenblatt RB,Brinkman RR,Gottardo R,Maecker H,McCoy JP. (2016). Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium. Sci Rep, 6, 20686.
Full-text Article: http://scholars.fhcrc.org/8868/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26861911/?otool=fhcrclib

Fiore-Gartland A,Manso BA,Friedrich DP,Gabriel EE,Finak G,Moodie Z,Hertz T,De Rosa SC,Frahm N,Gilbert PB,McElrath MJ. (2016). Pooled-Peptide Epitope Mapping Strategies Are Efficient and Highly Sensitive: An Evaluation of Methods for Identifying Human T Cell Epitope Specificities in Large-Scale HIV Vaccine Efficacy Trials. PLoS One, 11(2), e0147812.
Full-text Article: http://scholars.fhcrc.org/8870/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26863315/?otool=fhcrclib

Fogel JM,Hudelson SE,Ou SS,Hart S,Wallis C,Morgado MG,Saravanan S,Tripathy S,Hovind L,Piwowar-Manning E,Sabin D,McCauley M,Gamble T,Zhang XC,Eron JJ,Gallant JE,Kumwenda J,Makhema J,Kumarasamy N,Chariyalertsak S,Hakim J,Badal-Faesen S,Akelo V,Hosseinipour MC,Santos BR,Godbole SV,Pilotto JH,Grinsztejn B,Panchia R,Mayer KH,Chen YQ,Cohen MS,Eshleman SH. (2016). HIV drug resistance in adults failing early antiretroviral treatment: results from the HIV Prevention Trials Network 052 trial. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8863/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26859828/?otool=fhcrclib

Fu P,Hughes J,Zeng G,Hanook S,Orem J,Mwanda OW,Remick SC. (2016). A comparative investigation of methods for longitudinal data with limits of detection through a case study. Statistical Methods in Medical Research, 25(1), 153-166.
Full-text Article: http://scholars.fhcrc.org/9074/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/22504231/?otool=fhcrclib

Gantt S,Orem J,Krantz EM,Morrow RA,Selke S,Huang ML,Schiffer JT,Jerome KR,Nakaganda A,Wald A,Casper C,Corey L. (2016). Prospective characterization of the risk factors for transmission and symptoms of primary human herpesvirus infections among Ugandan infants. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8936/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26917575/?otool=fhcrclib

Ghassemieh BJ,Attia EF,Koelle DM,Mancuso JD,Narita M,Horne DJ. (2016). Latent Tuberculosis Infection Test Agreement in the National Health and Nutrition Examination Survey. Am J Respir Crit Care Med.
Full-text Article: http://scholars.fhcrc.org/8911/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26890477/?otool=fhcrclib

Gray GE,Laher F,Doherty T,Abdool Karim S,Hammer S,Mascola J,Beyrer C,Corey L. (2016). Which New Health Technologies Do We Need to Achieve an End to HIV/AIDS?. PLoS Biol, 14(3), e1002372.
Full-text Article: http://scholars.fhcrc.org/8979/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26933962/?otool=fhcrclib

Gray GE,Laher F,Lazarus E,Ensoli B,Corey L. (2016). Approaches to preventative and therapeutic HIV vaccines. Curr Opin Virol, 17, 104-109.
Full-text Article: http://scholars.fhcrc.org/9197/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26985884/?otool=fhcrclib

Green ML,Leisenring W,Xie H,Mast TC,Cui Y,Sandmaier BM,orror ML,Goyal S,Ozkok S,Yi J,Sahoo F,Kimball LE,Jerome KR,Marks MA,Boeckh M. (2016). Cytomegalovirus viral load and mortality after haemopoietic stem cell transplantation in the era of pre-emptive therapy: a retrospective cohort study. Lancet Haematol, 3(3), e119-27.
Full-text Article: http://scholars.fhcrc.org/9084/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26947200/?otool=fhcrclib

Green RR,Wilkins C,Pattabhi S,Dong R,Loo Y,Gale M, Jr.. (2016). Transcriptional analysis of antiviral small molecule therapeutics as agonists of the RLR pathway. Genom Data, 7, 290-2. PMCID: PMC4778670.
Full-text Article: http://scholars.fhcrc.org/9198/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26981429/?otool=fhcrclib

Greninger AL,Jerome KR. (2016). Draft Genome Sequence of Goose Dicistrovirus. Genome Announc, 4(2).
Full-text Article: http://scholars.fhcrc.org/8983/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26941149/?otool=fhcrclib

Hall Sedlak R,Hill JA,Nguyen T,Cho M,Levin G,Cook L,Huang ML,Flamand L,Zerr DM,Boeckh M,Jerome KR. (2016). Detection of HHV-6B reactivation in hematopoietic cell transplant recipients with inherited chromosomally integrated HHV-6A by droplet digital PCR. J Clin Microbiol.
Full-text Article: http://scholars.fhcrc.org/8907/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26888901/?otool=fhcrclib

Havenar-Daughton C,Lindqvist M,Heit A,Wu JE,Reiss SM,Kendric K,Belanger S,Kasturi SP,Landais E,Akondy RS,McGuire HM,Bothwell M,Vagefi PA,Scully E,Tomaras GD,Davis MM,Poignard P,Ahmed R,Walker BD,Pulendran B,McElrath MJ,Kaufmann DE,Crotty S. (2016). CXCL13 is a plasma biomarker of germinal center activity. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/8968/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908875/?otool=fhcrclib

Heddle NM,Boeckh M,Grossman B,Jacobson J,Kleinman S,Tobian AA,Webert K,Wong EC,Roback JD. (2016). AABB Committee Report: reducing transfusion-transmitted cytomegalovirus infections. Transfusion.
Full-text Article: http://scholars.fhcrc.org/9088/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26968400/?otool=fhcrclib

Hessell AJ,Malherbe DC,Pissani F,McBurney S,Krebs SJ,Gomes M,Pandey S,Sutton WF,Burwitz BJ,Gray M,Robins H,Park BS,Sacha JB,LaBranche CC,Fuller DH,Montefiori DC,Stamatatos L,Sather DN,Haigwood NL. (2016). Achieving Potent Autologous Neutralizing Antibody Responses against Tier 2 HIV-1 Viruses by Strategic Selection of Envelope Immunogens. J Immunol.
Full-text Article: http://scholars.fhcrc.org/8984/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26944928/?otool=fhcrclib

Hill JA,HallSedlak R,Magaret A,Huang ML,Zerr DM,Jerome KR,Boeckh M. (2016). Efficient identification of inherited chromosomally integrated human herpesvirus 6 using specimen pooling. J Clin Virol, 77, 71-76.
Full-text Article: http://scholars.fhcrc.org/8947/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26921738/?otool=fhcrclib

Huang Y. (2016). Evaluating and comparing biomarkers with respect to the area under the receiver operating characteristics curve in two-phase case-control studies. Biostatistics.
Full-text Article: http://scholars.fhcrc.org/8899/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26883772/?otool=fhcrclib

Johnston C,Gottlieb SL,Wald A. (2016). Status of vaccine research and development of vaccines for herpes simplex virus prepared for WHO PD-VAC. Vaccine.
Full-text Article: http://scholars.fhcrc.org/9201/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26973067/?otool=fhcrclib

Karcher MD,Palacios JA,Bedford T,Suchard MA,Minin VN. (2016). Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. PLoS Comput Biol, 12(3), e1004789.
Full-text Article: http://scholars.fhcrc.org/8982/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26938243/?otool=fhcrclib

Khosropour CM,Dombrowski JC,Swanson F,Kerani RP,Katz DA,Barbee LA,Hughes JP,Manhart LE,Golden MR. (2016). Trends in serosorting and the association with HIV/STI risk over time among men who have sex with men (MSM). J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8904/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26885806/?otool=fhcrclib

Kohrt HE,Tumeh PC,Benson D,Bhardwaj N,Brody J,Formenti S,Fox BA,Galon J,June CH,Kalos M,Kirsch I,Kleen T,Kroemer G,Lanier L,Levy R,Lyerly HK,Maecker H,Marabelle A,Melenhorst J,Miller J,Melero I,Odunsi K,Palucka K,Peoples G,Ribas A,Robins H,Robinson W,Serafini T,Sondel P,Vivier E,Weber J,Wolchok J,Zitvogel L,Disis ML,Cheever MA. (2016). Immunodynamics: a cancer immunotherapy trials network review of immune monitoring in immuno-oncology clinical trials. J Immunother Cancer, 4, 15. PMCID: PMC4791805.
Full-text Article: http://scholars.fhcrc.org/9204/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26981245/?otool=fhcrclib

Leitman EM,Hurst J,Mori M,Kublin J,Ndung'u T,Walker BD,Carlson J,Gray GE,Matthews PC,Frahm N,Goulder PJ. (2016). Lower Viral Loads and Slower CD4 Decline in MRKAd5 HIV-1 Vaccinees Expressing Disease-Susceptible HLA-B*58:02. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9090/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26951820/?otool=fhcrclib

Marty FM,Ostrosky-Zeichner L,Cornely OA,Mullane KM,Perfect JR,Thompson GR, 3rd,Alangaden GJ,Brown JM,Fredricks DN,Heinz WJ,Herbrecht R,Klimko N,Klyasova G,Maertens JA,Melinkeri SR,Oren I,Pappas PG,Racil Z,Rahav G,Santos R,Schwartz S,Vehreschild JJ,Young JH,Chetchotisakd P,Jaruratanasirikul S,Kanj SS,Engelhardt M,Kaufhold A,Ito M,Lee M,Sasse C,Maher RM,Zeiher B,Vehreschild MJ. (2016). Isavuconazole treatment for mucormycosis: a single-arm open-label trial and case-control analysis. Lancet Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9093/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26969258/?otool=fhcrclib

McGuire AT,Gray MD,Dosenovic P,Gitlin AD,Freund NT,Petersen J,Correnti C,Johnsen W,Kegel R,Stuart AB,Glenn J,Seaman MS,Schief WR,Strong RK,Nussenzweig MC,Stamatatos L. (2016). Specifically modified Env immunogens activate B-cell precursors of broadly neutralizing HIV-1 antibodies in transgenic mice. Nat Commun, 7, 10618.
Full-text Article: http://scholars.fhcrc.org/8948/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26907590/?otool=fhcrclib

Menon MP,Njau JD,McFarland DA. (2016). Cost and Predictors of Care-Seeking Behaviors among Caregivers of Febrile Children-Uganda, 2009. Am J Trop Med Hyg.
Full-text Article: http://scholars.fhcrc.org/8898/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26880780/?otool=fhcrclib

Mensch BS,Brown ER,Liu K,Marrazzo J,Chirenje ZM,Gomez K,Piper J,Patterson K,van der Straten A. (2016). Reporting of Adherence in the VOICE Trial: Did Disclosure of Product Nonuse Increase at the Termination Visit?. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8932/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26906023/?otool=fhcrclib

Mirembe BG,Kelly CW,Mgodi N,Greenspan S,Dai JY,Mayo A,Piper J,Akello CA,Kiweewa FM,Magure T,Nakabiito C,Marrazzo JM,Chirenje ZM,Riddler SA. (2016). Bone Mineral Density Changes Among Young, Healthy African Women Receiving Oral Tenofovir for HIV Preexposure Prophylaxis. J Acquir Immune Defic Syndr, 71(3), 287-94.
Full-text Article: http://scholars.fhcrc.org/8867/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26866954/?otool=fhcrclib

Mugwanya KK,Wyatt C,Celum C,Donnell D,Kiarie J,Ronald A,Baeten JM. (2016). Reversibility of Glomerular Renal Function Decline in HIV-Uninfected Men and Women Discontinuing Emtricitabine-Tenofovir Disoproxil Fumarate Pre-Exposure Prophylaxis. J Acquir Immune Defic Syndr, 71(4), 374-80.
Full-text Article: http://scholars.fhcrc.org/8933/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26914909/?otool=fhcrclib

Neher RA,Bedford T,Daniels RS,Russell CA,Shraiman BI. (2016). Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/9095/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26951657/?otool=fhcrclib

Peterson CW,Haworth KG,Burke BP,Polacino P,Norman KK,Adair JE,Hu SL,Bartlett JS,Symonds GP,Kiem HP. (2016). Multilineage polyclonal engraftment of Cal-1 gene-modified cells and in vivo selection after SHIV infection in a nonhuman primate model of AIDS. Mol Ther Methods Clin Dev, 3, 16007. PMCID: PMC4765711.
Full-text Article: http://scholars.fhcrc.org/9096/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26958575/?otool=fhcrclib

Peterson CW,Wang J,Norman KK,Norgaard ZK,Humbert O,Tse CK,Yan JJ,Trimble RG,Shivak DA,Rebar EJ,Gregory PD,Holmes MC,Kiem HP. (2016). Long-term multi-lineage engraftment of genome-edited hematopoietic stem cells after autologous transplantation in nonhuman primates. Blood.
Full-text Article: http://scholars.fhcrc.org/9174/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26980728/?otool=fhcrclib

Pettifor A,MacPhail C,Selin A,Gomez-Olive FX,Rosenberg M,Wagner RG,Mabuza W,Hughes JP,Suchindran C,Piwowar-Manning E,Wang J,Twine R,Daniel T,Andrew P,Laeyendecker O,Agyei Y,Tollman S,Kahn K. (2016). HPTN 068: A Randomized Control Trial of a Conditional Cash Transfer to Reduce HIV Infection in Young Women in South Africa-Study Design and Baseline Results. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8913/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26891839/?otool=fhcrclib

Roxby AC,Fredricks DN,Odem-Davis K,Asbjornsdottir K,Masese L,Fiedler TL,De Rosa S,Jaoko W,Kiarie JN,Overbaugh J,McClelland RS. (2016). Changes in Vaginal Microbiota and Immune Mediators in HIV-1-Seronegative Kenyan Women Initiating Depot Medroxyprogesterone Acetate. J Acquir Immune Defic Syndr, 71(4), 359-66.
Full-text Article: http://scholars.fhcrc.org/8935/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26914908/?otool=fhcrclib

Sivagnanam S,Pergam SA. (2016). Legionellosis in Transplantation. Curr Infect Dis Rep, 18(3), 9.
Full-text Article: http://scholars.fhcrc.org/8891/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26857395/?otool=fhcrclib

Strong RK,Finton KA. (2016). The Broadly Neutralizing, Anti-HIV Antibody 4E10: an Open and Shut Case?. J Virol, 90(6), 3274-5.
Full-text Article: http://scholars.fhcrc.org/8944/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26921372/?otool=fhcrclib

Teira P,Battiwalla M,Ramanathan M,Barrett AJ,Ahn KW,Chen M,Green JS,Saad A,Antin JH,Savani BN,Lazarus HM,Seftel M,Saber W,Marks D,Aljurf M,Norkin M,Wingard JR,Lindemans CA,Boeckh M,Riches ML,Auletta JJ. (2016). Early cytomegalovirus reactivation remains associated with increased transplant related mortality in the current era: a CIBMTR analysis. Blood.
Full-text Article: http://scholars.fhcrc.org/8901/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26884374/?otool=fhcrclib

Waghmare A,Englund JA,Boeckh M. (2016). How I treat respiratory viral infections in the setting of intensive chemotherapy or hematopoietic cell transplantation. Blood.
Full-text Article: http://scholars.fhcrc.org/9083/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26968533/?otool=fhcrclib

February

Baden LR, Karita E, Mutua G, Bekker LG, Gray G, Page-Shipp L, Walsh SR, Nyombayire J, Anzala O, Roux S, Laher F, Innes C, Seaman MS, Cohen YZ, Peter L, Frahm N, McElrath MJ, Hayes P, Swann E, Grunenberg N, Grazia-Pau M, Weijtens M, Sadoff J, Dally L, Lombardo A, Gilmour J, Cox J, Dolin R, Fast P, Barouch DH, Laufer DS. (2016). Assessment of the Safety and Immunogenicity of 2 Novel Vaccine Platforms for HIV-1 Prevention: A Randomized Trial. Ann Intern Med.
Full-text Article: http://scholars.fhcrc.org/8822/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26833336/?otool=fhcrclib

Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH. (2016). Automated analysis of flow cytometry data comes of age. Cytometry A, 89(1), 13-5.
Full-text Article: http://scholars.fhcrc.org/8807/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26812230/?otool=fhcrclib

Deschamps MM, Metch B, Morgan CA, Zorilla CD, Donastorg Y, Swann E, Taina D, Patrice J, Pape WJ. (2016). Feasibility of Identifying a Female Sex Worker Cohort at High Risk of HIV Infection in the Caribbean for HIV Vaccine Efficacy Trials: Longitudinal Results of HVTN 907. J Acquir Immune Defic Syndr, 71(1), 70-7. PMCID: PMC4712715.
Full-text Article: http://scholars.fhcrc.org/8724/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761272/?otool=fhcrclib

Dimitrov D, Kublin JG, Ramsey S, Corey L. (2015). Are Clade Specific HIV Vaccines a Necessity? An Analysis Based on Mathematical Models. EBioMedicine, 2(12), 2062-9. PMCID: PMC4703729.
Full-text Article: http://scholars.fhcrc.org/8829/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26844286/?otool=fhcrclib

Fleming TR, Ellenberg SS. (2016). Evaluating interventions for Ebola: The need for randomized trials. Clin Trials.
Full-text Article: http://scholars.fhcrc.org/8706/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26768563/?otool=fhcrclib

Hammer MJ, Melkus GDE, Knobf MT, Casper C, Fletcher J, Cleland CM. (2016). Glycemic Status and Infection Risk in Nondiabetic Autologous Hematopoietic Cell Transplantation Recipients. Biol Res Nurs.
Full-text Article: http://scholars.fhcrc.org/8778/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26792914/?otool=fhcrclib

Huang Y, DiazGranados C, Janes H, Huang Y, deCamp AC, Metch B, Grant S, Sanchez B, Phogat S, Koutsoukos M, Kanesa-Thasan N, Bourguignon P, Collard A, Buchbinder S, Tomaras GD, McElrath J, Gray G, Kublin JG, Corey L, Gilbert PB. (2016). Selection of HIV vaccine candidates for concurrent testing in an efficacy trial. Curr Opin Virol, 17, 57-65.
Full-text Article: http://scholars.fhcrc.org/8820/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26827165/?otool=fhcrclib

Huang Y, Zhang L, Jolliffe D, Hovden AO, Okvist M, Pantaleo G, Sommerfelt MA. (2016). A case for preART-adjusted endpoints in HIV therapeutic vaccine trials. Vaccine.
Full-text Article: http://scholars.fhcrc.org/8798/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26826543/?otool=fhcrclib  

Jacobson JM, Zheng L, Wilson CC, Tebas P, Matining RM, Egan MA, Eldridge J, Landay AL, Clifford DB, Luetkemeyer AF, Tiu J, Martinez AL, Janik J, Spitz TA, Hural J, McElrath J, Frahm N. (2016). The Safety and Immunogenicity of an Interleukin-12-Enhanced Multiantigen DNA Vaccine Delivered by Electroporation for the Treatment of HIV-1 Infection. J Acquir Immune Defic Syndr, 71(2), 163-71. PMCID: PMC4712745.
Full-text Article: http://scholars.fhcrc.org/8708/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761518/?otool=fhcrclib  

Jing L, Laing KJ, Dong L, Russell RM, Barlow RS, Haas JG, Ramchandani MS, Johnston C, Buus S, Redwood AJ, White KD, Mallal SA, Phillips EJ, Posavad CM, Wald A, Koelle DM. (2016). Extensive CD4 and CD8 T Cell Cross-Reactivity between Alphaherpesviruses. J Immunol.
Full-text Article: http://scholars.fhcrc.org/8812/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26810224/?otool=fhcrclib  

Kyu HH, et al. (2016). Global and National Burden of Diseases and Injuries Among Children and Adolescents Between 1990 and 2013: Findings From the Global Burden of Disease 2013 Study. JAMA Pediatr.
Full-text Article: http://scholars.fhcrc.org/8801/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26810619/?otool=fhcrclib  

Lednicky JA, Iovine NM, Brew J, Loeb JC, Sugimoto JD, Rand KH, Morris JGJ. (2016). Hemagglutinin Gene Clade 3C.2a Influenza A(H3N2) Viruses, Alachua County, Florida, USA, 2014-15. Emerg Infect Dis, 22(1), 121-3. PMCID: PMC4696699.
Full-text Article: http://scholars.fhcrc.org/8774/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26692074/?otool=fhcrclib  

Lorenzo-Redondo R, Fryer HR, Bedford T, Kim EY, Archer J, Kosakovsky Pond SL, Chung YS, Penugonda S, Chipman JG, Fletcher CV, Schacker TW, Malim MH, Rambaut A, Haase AT, McLean AR, Wolinsky SM. (2016). Persistent HIV-1 replication maintains the tissue reservoir during therapy. Nature.
Full-text Article: http://scholars.fhcrc.org/8816/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26814962/?otool=fhcrclib  

Mather CA, Werth BJ, Sivagnanam S, SenGupta DJ, Butler-Wu SM. (2016). Rapid Detection of Vancomycin Intermediate Staphylococcus aureus (VISA) by Matrix Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS). J Clin Microbiol.
Full-text Article: http://scholars.fhcrc.org/8737/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26763961/?otool=fhcrclib  

Meyer AG, Spielman SJ, Bedford T, Wilke CO. (2015). Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak. Virus Evol, 1(1). PMCID: PMC4710376.
Full-text Article: http://scholars.fhcrc.org/8699/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26770819/?otool=fhcrclib  

Milligan C, Omenda MM, Chohan V, Odem-Davis K, Richardson BA, Nduati R, Overbaugh J. (2016). Maternal Neutralization-Resistant Virus Variants Do Not Predict Infant HIV Infection Risk. MBio, 7(1).
Full-text Article: http://scholars.fhcrc.org/8824/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26838723/?otool=fhcrclib  

Pergam SA. (2016). Infection Prevention in Transplantation. Curr Infect Dis Rep, 18(2), 7.
Full-text Article: http://scholars.fhcrc.org/8785/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26820654/?otool=fhcrclib  

Schiffer JT, Swan DA, Magaret A, Corey L, Wald A, Ossig J, Ruebsamen-Schaeff H, Stoelben S, Timmler B, Zimmermann H, Melhem MR, Van Wart SA, Rubino CM, Birkmann A. (2016). Mathematical modeling of herpes simplex virus-2 suppression with pritelivir predicts trial outcomes. Sci Transl Med, 8(324), 324ra15.
Full-text Article: http://scholars.fhcrc.org/8843/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26843190/?otool=fhcrclib  

Sedlak RH, Liang S,Niyonzima N, De Silva Feelixge HS, Roychoudhury P, Greninger AL, Weber ND, Boissel S, Scharenberg AM, Cheng A, Magaret A, Bumgarner R, Stone D, Jerome KR. (2016). Digital detection of endonuclease mediated gene disruption in the HIV provirus. Sci Rep, 6, 20064. PMCID: PMC4735761.
Full-text Article: http://scholars.fhcrc.org/8844/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26829887/?otool=fhcrclib  

Stachel D, Stevens-Ayers T, Boeckh M. (2015). In vitro studies of the impact of maribavir on CMV-specific cellular immune responses. J Clin Virol, 75, 53-59.
Full-text Article: http://scholars.fhcrc.org/8765/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26780109/?otool=fhcrclib  

Uy GL, et al. (2015). Contribution of chemotherapy mobilization to disease control in multiple myeloma treated with autologous hematopoietic cell transplantation. Bone Marrow Transplant, 50(12), 1513-8. PMCID: PMC4548821.
Full-text Article: http://scholars.fhcrc.org/8773/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26301967/?otool=fhcrclib  

van der Straten A, Brown ER, Marrazzo JM, Chirenje MZ, Liu K, Gomez K, Marzinke MA, Piper JM, Hendrix CW. (2016). Divergent adherence estimates with pharmacokinetic and behavioural measures in the MTN-003 (VOICE) study. J Int AIDS Soc, 19(1), 20642.
Full-text Article: http://scholars.fhcrc.org/8847/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26850270/?otool=fhcrclib  

van der Straten A, Panther L, Laborde N, Hoesley CJ, Cheng H, Husnik MJ, Horn S, Nel A, Soto-Torres L, Chen BA. (2016). Adherence and Acceptability of a Multidrug Vaginal Ring for HIV Prevention in a Phase I Study in the United States. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8848/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26837628/?otool=fhcrclib   

Vigdorovich V, Strong RK, Miller AD. (2016). Correction for Vigdorovich et al., Expression and Characterization of a Soluble, Active Form of the Jaagsiekte Sheep Retrovirus Receptor, Hyal2. J Virol, 90(4), 2159.
Full-text Article: http://scholars.fhcrc.org/8818/   
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26822597/?otool=fhcrclib  

Xu DR, Gong W, Caine ED, Xiao S, Hughes JP, Ng M, Simoni J, He H, Smith KL, Brown HSr, Gloyd S. (2016). Lay health supporters aided by a mobile phone messaging system to improve care of villagers with schizophrenia in Liuyang, China: protocol for a randomised control trial. BMJ Open, 6(1), e010120.
Full-text Article: http://scholars.fhcrc.org/8776/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26792221/?otool=fhcrclib  

Zhou JC, Chu HT, Hudgens MG, Halloran ME. (2016). A Bayesian approach to estimating causal vaccine effects on binary post-infection outcomes. Statistics in Medicine, 35(1), 53-64.
Full-text Article: http://scholars.fhcrc.org/8826/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26194767/?otool=fhcrclib  

January

Bender Ignacio RA, Lee JY, Rudek MA, Dittmer DP, Ambinder RF, Krown SE, Team AMCA-S. (2015). A phase 1b/pharmacokinetic trial of PTC299, a novel post-transcriptional VEGF inhibitor, for AIDS-related Kaposi's sarcoma: AIDS Malignancy Consortium trial 059. Journal of acquired immune deficiency syndromes.
Full-text Article:  http://scholars.fhcrc.org/8610/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26689971?otool=fhcrclib

Cheng G-S, Campbell AP, Xie H, Stednick Z, Callais C, Leisenring WM, Englund JA, Chien JW, Boeckh M. (2015). Correlation and Agreement of Handheld Spirometry with Laboratory Spirometry in Allogeneic Hematopoietic Cell Transplant Recipients. Biol Blood Marrow Transplant.
Full-text Article:  http://scholars.fhcrc.org/8669/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26748162?otool=fhcrclib

De Silva Feelixge HS, Stone D, Pietz HL, Roychoudhury P, Greninger AL, Schiffer JT, Aubert M, Jerome KR. (2016). Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy. Antiviral Res, 126, 90-8.
Full-text Article:  http://scholars.fhcrc.org/8656/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26718067?otool=fhcrclib

Deschamps MM, Metch B, Morgan CA, Zorilla CD, Donastorg Y, Swann E, Taina D, Patrice J, Pape WJ, Team HS. (2016). Feasibility of Identifying a Female Sex Worker Cohort at High Risk of HIV Infection in the Caribbean for HIV Vaccine Efficacy Trials: Longitudinal Results of HVTN 907. Journal of acquired immune deficiency syndromes, 71(1), 70-7.
Full-text Article:  http://scholars.fhcrc.org/8693/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761272?otool=fhcrclib

Fife KH, Mugwanya K, Thomas KK, Baeten JM, Celum C, Bukusi E, de Bruyn G, Mujugira A, Vwalika B, Wald A, Lingappa JR. (2015). Transient Increase in HSV-2-Associated Genital Ulcers Following Initiation of Antiretroviral Therapy in HIV-1/HSV-2 Co-Infected Individuals. J Infect Dis.
Full-text Article:  http://scholars.fhcrc.org/8606/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26704611?otool=fhcrclib

Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M, Linsley PS, Gottardo R. (2015). MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data. Genome Biol, 16, 278. PMCID: PMC4676162.
Full-text Article:  http://scholars.fhcrc.org/8595/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26653891?otool=fhcrclib

Gilbert PB, Gabriel EE, Huang Y, Chan ISF. (2015). Surrogate Endpoint Evaluation: Principal Stratification Criteria and the Prentice Definition. J Causal Inference, 3(2), 157-75. PMCID: PMC4692254.
Full-text Article:  http://scholars.fhcrc.org/8638/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26722639?otool=fhcrclib

Gilbert PB, Gabriel EE, Hudgens MG, Miao X, Li X, Su S-C, Parrino J, Chan ISF. (2015). Reply to Dunning. J Infect Dis, 212(9), 1521-3. PMCID: PMC4612359.
Full-text Article:  http://scholars.fhcrc.org/8567/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25985906?otool=fhcrclib

Pattacini L, Baeten JM, Thomas KK, Fluharty TR, Murnane PM, Donnell D, Bukusi E, Ronald A, Mugo N, Lingappa JR, Celum C, McElrath MJ, Lund JM. (2015). Regulatory T-cell activity but not conventional HIV-specific T-cell responses are associated with protection from HIV-1 infection. Journal of acquired immune deficiency syndromes.
Full-text Article:  http://scholars.fhcrc.org/8591/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26656786?otool=fhcrclib

Polyak CS, Yuhas K, Singa B, Khaemba M, Walson J, Richardson BA, John-Stewart G. (2016). Cotrimoxazole Prophylaxis Discontinuation among Antiretroviral-Treated HIV-1-Infected Adults in Kenya: A Randomized Non-inferiority Trial. PLoS Med, 13(1), e1001934.
Full-text Article:  http://scholars.fhcrc.org/8672/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26731191?otool=fhcrclib

Robertson K, Jiang H, Evans SR, Marra CM, Berzins B, Hakim J, Sacktor N, Silva MT, Campbell TB, Nair A, Schouten JT, Kumwenda J, Supparatpinyo K, Tripathy S, Kumarasamy N, la Rosa A, Montano S, Mwafongo A, Firnhaber C, Sanne I, Naini L, Amod F, Walawander A, Group ACT. (2016). International neurocognitive normative study: neurocognitive comparison data in diverse resource-limited settings: AIDS Clinical Trials Group A5271. J Neurovirol.
Full-text Article:  http://scholars.fhcrc.org/8688/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26733457?otool=fhcrclib

Ruel-Bergeron JC, Stevens GA, Sugimoto JD, Roos FF, Ezzati M, Black RE, Kraemer K. (2015). Global Update and Trends of Hidden Hunger, 1995-2011: The Hidden Hunger Index. PLoS One, 10(12), e0143497.
Full-text Article:  http://scholars.fhcrc.org/8579/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26673631?otool=fhcrclib

Weis JF, Baeten JM, McCoy CO, Warth C, Donnell D, Thomas KK, Hendrix CW, Marzinke MA, Mugo N, Iv FAM, Celum C, Lehman DA. (2016). Preexposure prophylaxis-selected drug resistance decays rapidly after drug cessation. Aids, 30(1), 31-5. PMCID: PMC4704103.
Full-text Article:  http://scholars.fhcrc.org/8666/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26731753?otool=fhcrclib

Williams KM, Ahn KW, Chen M, Aljurf MD, Agwu AL, Chen AR, Walsh TJ, Szabolcs P, Boeckh MJ, Auletta JJ, Lindemans CA, Zanis-Neto J, Malvezzi M, Lister J, de Toledo Codina JS, Sackey K, Chakrabarty JL, Ljungman P, Wingard JR, Seftel MD, Seo S, Hale GA, Wirk B, Smith MS, Savani BN, Lazarus HM, Marks DI, Ustun C, Abdel-Azim H, Dvorak CC, Szer J, Storek J, Yong A, Riches MR. (2016). The incidence, mortality and timing of Pneumocystis jiroveci pneumonia after hematopoietic cell transplantation: a CIBMTR analysis. Bone Marrow Transplant.
Full-text Article:  http://scholars.fhcrc.org/8675/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26726945?otool=fhcrclib


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