Vaccine and Infectious Disease Division

Recent Publications

Print outs of scientific publications

2017

February

Aiyegbo MS, Shmelkov E, Dominguez L, Goger M, Battacharya S, deCamp AC, Gilbert PB, Berman PW, Cardozo T. Peptide Targeted by Human Antibodies Associated with HIV Vaccine-Associated Protection Assumes a Dynamic alpha-Helical Structure. PLoS One. 2017 Jan 20;12(1):e0170530.
Full-text Article: http://scholars.fhcrc.org/11094/

Bateman AC, Greninger AL, Atienza EE, Limaye AP, Jerome KR, Cook L. Quantification of BK Virus Standards by Quantitative Real-Time PCR and Droplet Digital PCR Is Confounded by Multiple Virus Populations in the WHO BKV International Standard. Clin Chem. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11061/

Boeckh M, Stevens-Ayers T, Travi G, Huang ML, Cheng GS, Xie H, Leisenring W, Erard V, Seo S, Kimball L, Corey L, Pergam SA, Jerome KR. Bronchoalveolar Lavage DNA Quantification in Cytomegalovirus Pneumonia after Hematopoietic Cell Transplantation. J Infect Dis. 2017 Feb 9. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11171/

Cagle A, McGrath C, Richardson BA, Donovan D, Sakr S, Yatich N, Ngomoa R, Chepngeno Langat A, John-Stewart G, Chung MH. Alcohol use and immune reconstitution among HIV-infected patients on antiretroviral therapy in Nairobi, Kenya. AIDS Care. 2017 Jan 29:1-6.
Full-text Article: http://scholars.fhcrc.org/11120/

Chirenje ZM, Gundacker HM, Richardson B, Rabe L, Gaffoor Z, Nair GL, Mirembe BG, Piper JM, Hillier S, Marrazzo J. Risk Factors for Incidence of Sexually Transmitted Infections Among Women in a Human Immunodeficiency Virus Chemoprevention Trial VOICE (MTN-003). Sex Transm Dis. 2017 Mar;44(3):135-140
Full-text Article: http://scholars.fhcrc.org/11170/

Cohen KW, Frahm N. Current views on the potential for development of a HIV vaccine. Expert Opin Biol Ther. 2017 Mar;17(3):295-303.
Full-text Article: http://scholars.fhcrc.org/11041/

Cybis GB, Sinsheimer JS, Bedford T, Rambaut A, Lemey P, Suchard MA. Bayesian nonparametric clustering in phylogenetics modeling antigenic evolution in influenza. Stat Med. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11057/

Da Costa A, Garza E, Graham JB, Swarts JL, Soerens AG, Gale M, Lund JM. Extrinsic MAVS signaling is critical for Treg maintenance of Foxp3 expression following acute flavivirus infection. Sci Rep. 2017 Jan 17;7:40720.
Full-text Article: http://scholars.fhcrc.org/11038/

Fajgenbaum DC, Uldrick TS, Bagg A, Frank D, Wu D, Srkalovic G, Simpson D, Liu AY, Menke D, Chandrakasan S, Lechowicz MJ, Wong RS, Pierson S, Paessler M, Rossi JF, Ide M, Ruth J, Croglio M, Suarez A, Krymskaya V, Chadburn A, Colleoni G, Nasta S, Jayanthan R, Nabel CS, Casper C, Dispenzieri A, Fossa A, Kelleher D, Kurzrock R, Voorhees P, Dogan A, Yoshizaki K, van Rhee F, Oksenhendler E, Jaffe ES, Elenitoba-Johnson KS, Lim MS. International, evidence-based consensus diagnostic criteria for HHV-8-negative/idiopathic multicentric Castleman disease. Blood. 2017 Jan 13. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11028/

Fleming TR, DeMets DL, Roe MT, Wittes J, Calis KA, Vora AN, Meisel A, Bain RP, Konstam MA, Pencina MJ, Gordon DJ, Mahaffey KW, Hennekens CH, Neaton JD, Pearson GD, Andersson TL, Pfeffer MA, Ellenberg SS. Rejoinder. Clin Trials. 2017 Jan 1:1740774516688917.
Full-text Article: http://scholars.fhcrc.org/11128/

Garcia-Arriaza J, Perdiguero B, Heeney JL, Seaman MS, Montefiori DC, Yates NL, Tomaras GD, Ferrari G, Foulds KE, Roederer M, Self SG, Borate B, Gottardo R, Phogat S, Tartaglia J, Barnett SW, Burke B, Cristillo AD, Weiss DE, Lee C, Kibler KV, Jacobs BL, Wagner R, Ding S, Pantaleo G, Esteban M. HIV/AIDS vaccine candidates based on replication-competent recombinant poxvirus NYVAC-C-KC expressing trimeric gp140 and Gag-derived VLPs or lacking the viral molecule B19 that inhibits type I interferon activate relevant HIV-1-specific B and T cell immune functions in non-human primates. J Virol. 2017 Feb 8. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11172/

Goyette MS, Wilson KS, Deya R, Masese LN, Shafi J, Richardson BA, Mandaliya K, Jaoko W, McClelland RS. Association between menopause and unprotected sex in high-risk HIV-positive women in Mombasa, Kenya. J Acquir Immune Defic Syndr. 2016 Dec 30. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11009/

Halloran ME, Hudgens MG. Dependent Happenings A Recent Methodological Review. Curr Epidemiol Rep. 2016 Dec;3(4):297-305.
Full-text Article: http://scholars.fhcrc.org/11123/

Huang Y, Zhang L, Janes H, Frahm N, Isaacs A, Kim JH, Montefiori D, McElrath MJ, Tomaras GD, Gilbert PB. Predictors of durable immune responses six months after the last vaccination in preventive HIV vaccine trials. Vaccine. 2017 Feb 22;35(8):1184-1193.
Full-text Article: http://scholars.fhcrc.org/11117/

Kerr KF, Brown M, Janes H. Reply to A.J. Vickers et al. J Clin Oncol. 2017 Feb;35(4):473-475.
Full-text Article: http://scholars.fhcrc.org/11115/

Khosropour CM, Dombrowski JC, Hughes JP, Manhart LE, Simoni JM, Golden MR. Operationalizing the Measurement of Seroadaptive Behaviors A Comparison of Reported Sexual Behaviors and Purposely-Adopted Behaviors Among Men who have Sex with Men (MSM) in Seattle. AIDS Behav. 2017 Jan 17. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11048/

LaCourse SM, Cranmer LM, Matemo D, Kinuthia J, Richardson BA, Horne DJ, John-Stewart G. Effect of pregnancy on interferon gamma release-assay and tuberculin skin test detection of latent TB infection among HIV-infected women in a high burden setting. J Acquir Immune Defic Syndr. 2017 Jan 30. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11134/

Looker KJ, Magaret AS, May MT, Turner KM, Vickerman P, Newman LM, Gottlieb SL. First estimates of the global and regional incidence of neonatal herpes infection. Lancet Glob Health. 2017 Mar;5(3):e300-e309.
Full-text Article: http://scholars.fhcrc.org/11152/

Lovelace ES, Maurice NJ, Miller HW, Slichter CK, Harrington R, Magaret A, Prlic M, De Rosa S, Polyak SJ. Silymarin suppresses basal and stimulus-induced activation, exhaustion, differentiation, and inflammatory markers in primary human immune cells. PLoS One. 2017 Feb 3;12(2):e0171139.
Full-text Article: http://scholars.fhcrc.org/11156/

Luedtke AR, van der Laan MJ. Personalized Dose Finding Using Outcome Weighted Learning Comment. Journal of the American Statistical Association. 2016;111(516): 1526-1530.
Full-text Article: http://scholars.fhcrc.org/11179/

Lund JM, Broliden K, Pyra MN, Thomas KK, Donnell D, Irungu E, Muwonge TR, Mugo N, Manohar M, Jansson M, Mackelprang R, Marzinke MA, Baeten JM, Lingappa JR. Correction for Lund et al., HIV-1-Neutralizing IgA Detected in Genital Secretions of Highly HIV-1-Exposed Seronegative Women on Oral Preexposure Prophylaxis. J Virol. 2017 Jan 18;91(3).
Full-text Article: http://scholars.fhcrc.org/11068/

Mazengia E, Kawakami V, Rietberg K, Kay M, Wyman P, Skilton C, Aberra A, Boonyaratanakornkit J, Limaye AP, Pergam SA, Whimbey E, Olsen-Scribner RJ, Duchin JS. Hospital-acquired listeriosis linked to a persistently contaminated milkshake machine. Epidemiol Infect. 2017 Jan 9:1-7.
Full-text Article: http://scholars.fhcrc.org/11006/

Miller NJ, Church CD, Dong L, Crispin D, Fitzgibbon MP, Lachance K, Jing L, Shinohara M, Gavvovidis I, Willimsky G, McIntosh M, Blankenstein T, Koelle DM, Nghiem P. Tumor-Infiltrating Merkel Cell Polyomavirus-Specific T Cells Are Diverse and Associated with Improved Patient Survival. Cancer Immunol Res. 2017 Feb;5(2):137-147.
Full-text Article: http://scholars.fhcrc.org/11036/

Okuku F, Krantz EM, Kafeero J, Kamya MR, Orem J, Casper C, Phipps W. Evaluation of a predictive staging model for HIV-associated Kaposi sarcoma in Uganda. J Acquir Immune Defic Syndr. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11097/

Seremba E, Ssempijja V, Kalibbala S, Gray RH, Wawer MJ, Nalugoda F, Casper C, Phipps WT, Ocama P, Serwadda D, Thomas DL, Reynolds S. Hepatitis B incidence and prevention with antiretroviral therapy among HIV positive individuals in Rakai, Uganda. AIDS. 2017 Jan 17. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11060/

Stamatatos L, Pancera M, McGuire AT. Germline-targeting immunogens. Immunol Rev. 2017 Jan;275(1):203-216.
Full-text Article: http://scholars.fhcrc.org/11125/   

Wandell GM, Molina Y, Sanchez H, Greer AC, Rios J, Bain C, Segura P, Lama JR, Sanchez J, Duerr A. Knowledge and preferences concerning acute HIV testing programs among both Peruvian men who have sex with men and transgender women. Int J STD AIDS. 2017 Jan 1:956462416685674.
Full-text Article: http://scholars.fhcrc.org/11014/   

Wood DT, Kojouharov HV, Dimitrov DT. Universal approaches to approximate biological systems with nonstandard finite difference methods. Mathematics and Computers in Simulation. 2017;133:337-350.
Full-text Article: http://scholars.fhcrc.org/11049/  

Yanez ND, Aljasser I, Andre M, Hu CC, Juraska M, Lumley T. Assessing the impact of measurement error in modeling change in the absence of auxiliary data. Communications in Statistics-Theory and Methods. 2017;46(6):2667-2680.
Full-text Article: http://scholars.fhcrc.org/11019/  

Zhao W, Chen YQ, Hsu L. On estimation of time-dependent attributable fraction from population-based case-control studies. Biometrics. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11063/  

January

Astronomo RD, Santra S, Ballweber-Fleming L, Westerberg KG, Mach L, Hensley-McBain T, Sutherland L, Mildenberg B, Morton G, Yates NL, Mize GJ, Pollara J, Hladik F, Ochsenbauer C, Denny TN, Warrier R, Rerks-Ngarm S, Pitisuttithum P, Nitayapan S, Kaewkungwal J, Ferrari G, Shaw GM, Xia SM, Liao HX, Montefiori DC, Tomaras GD, Haynes BF, McElrath M Juliana. Neutralization Takes Precedence Over IgG or IgA Isotype-related Functions in Mucosal HIV-1 Antibody-mediated Protection. EBioMedicine. 2016 Dec;14:97-111.
Full-text Article: http://scholars.fhcrc.org/10851/

Bajema KL, Dalesandro MF, Fredricks DN, Ramchandani M. Disseminated coccidioidomycosis presenting with intramedullary spinal cord abscesses Management challenges. Med Mycol Case Rep. 2016 Dec 2;15:1-4.
Full-text Article: http://scholars.fhcrc.org/10972/

Chen I, Chau G, Wang J, Clarke W, Marzinke MA, Cummings V, Breaud A, Laeyendecker O, Fields SD, Griffith S, Scott HM, Shoptaw S, Del Rio C, Magnus M, Mannheimer S, Tieu HV, Wheeler DP, Mayer KH, Koblin BA, Eshleman SH.  Analysis of HIV Diversity in HIV-Infected Black Men Who Have Sex with Men (HPTN 061). PLoS One. 2016 Dec 9;11(12):e0167629
Full-text Article: http://scholars.fhcrc.org/10876/

Cranston RD, Lama JR, Richardson BA, Carballo-Dieguez A, Kunjara Na Ayudhya RP, Liu K, Patterson KB, Leu CS, Galaska B, Jacobson CE, Parikh UM, Marzinke MA, Hendrix CW, Johnson S, Piper JM, Grossman C, Ho KS, Lucas J, Pickett J, Bekker LG, Chariyalertsak S, Chitwarakorn A, Gonzales P, Holtz TH, Liu AY, Mayer KH, Zorrilla C, Schwartz JL, Rooney J, McGowan I. MTN-017 A Rectal Phase 2 Extended Safety and Acceptability Study of Tenofovir Reduced-Glycerin 1% Gel. Clin Infect Dis. 2016 Dec 16. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10910/

Golden MR, Hughes JP, Dombrowski JC. Optimizing the Timing of HIV Screening as Part of Routine Medical Care. AIDS Patient Care STDS. 2017 Jan;31(1):27-32.
Full-text Article: http://scholars.fhcrc.org/10988/

Greninger AL, Bateman AC, Atienza EE, Wendt S, Makhsous N, Jerome KR, Cook L. Copy number heterogeneity of JC virus standards. J Clin Microbiol. 2016 Dec 14. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10889/

Kublin JG, Mikolajczak SA, Sack BK, Fishbaugher ME, Seilie A, Shelton L, VonGoedert T, Firat M, Magee S, Fritzen E, Betz W, Kain HS, Dankwa DA, Steel RW, Vaughan AM, Noah Sather D, Murphy SC, Kappe SH. Complete attenuation of genetically engineered Plasmodium falciparum sporozoites in human subjects. Sci Transl Med. 2017 Jan 4;9(371).
Full-text Article: http://scholars.fhcrc.org/10984/

Lampe JW, Huang Y, Neuhouser ML, Tinker LF, Song X, Schoeller DA, Kim S, Raftery D, Di C, Zheng C, Schwarz Y, Van Horn L, Thomson CA, Mossavar-Rahmani Y, Beresford SA, Prentice RL. Dietary biomarker evaluation in a controlled feeding study in women from the Women's Health Initiative cohort. Am J Clin Nutr. 2017 Feb;105(2):466-475.
Full-text Article: http://scholars.fhcrc.org/10944/

Maziarz RT, Brazauskas R, Chen M, McLeod AA, Martino R, Wingard JR, Aljurf M, Battiwalla M, Dvorak CC, Geroge B, Guinan EC, Hale GA, Lazarus HM, Lee JW, Liesveld JL, Ramanathan M, Reddy V, Savani BN, Smith FO, Strasfeld L, Taplitz RA, Ustun C, Boeckh MJ, Gea-Banacloche J, Lindemans CA, Auletta JJ, Riches ML. Pre-existing invasive fungal infection is not a contraindication for allogeneic HSCT for patients with hematologic malignancies a CIBMTR study. Bone Marrow Transplant. 2017 Feb;52(2):270-278.
Full-text Article: http://scholars.fhcrc.org/10922/

Posavad CM, Zhao L, Dong L, Jin L, Stevens CE, Magaret AS, Johnston C, Wald A, Zhu J, Corey L, Koelle DM. Enrichment of herpes simplex virus type 2 (HSV-2) reactive mucosal T cells in the human female genital tract. Mucosal Immunol. 2017 Jan 4. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10977/

Qi L, Sun Y, Gilbert PB. Generalized semiparametric varying-coefficient model for longitudinal data with applications to adaptive treatment randomizations. Biometrics. 2016 Dec 5. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10848/

Sahoo F, Hill JA, Xie H, Leisenring W, Yi J, Goyal S, Kimball LE, Lee I, Seo S, Davis C, Pergam SA, Flowers ME, Liaw KL, Holmberg L, Boeckh M. Herpes Zoster in Autologous Hematopoietic Cell Transplant Recipients in the Era of Acyclovir or Valacyclovir Prophylaxis and Novel Treatment and Maintenance Therapies. Biol Blood Marrow Transplant. 2017 Mar;23(3):505-511.
Full-text Article: http://scholars.fhcrc.org/10966/

Wald A, Timmler B, Magaret A, Warren T, Tyring S, Johnston C, Fife K, Selke S, Huang ML, Stobernack HP, Zimmermann H, Corey L, Birkmann A, Ruebsamen-Schaeff H. Effect of Pritelivir Compared With Valacyclovir on Genital HSV-2 Shedding in Patients With Frequent Recurrences A Randomized Clinical Trial. JAMA. 2016 Dec 20;316(23):2495-2503.
Full-text Article: http://scholars.fhcrc.org/10931/

Wald A. Hermeneutics of Herpes The American Sexually Transmitted Diseases Association Distinguished Career Award Lecture. Sex Transm Dis. 2017 Jan;44(1):1-5.
Full-text Article: http://scholars.fhcrc.org/10868/

Xi LF, Schiffman M, Ke Y, Hughes JP, Galloway DA, He Z, Hulbert A, Winer RL, Koutsky LA, Kiviat NB. Type-Dependent Association between Risk of Cervical Intraepithelial Neoplasia and Viral Load of Oncogenic Human Papillomavirus Types Other than Types 16 and 18. Int J Cancer. 2017 Jan 4. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10986/


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