Recent Publications

Vaccine and Infectious Disease Division

Recent Publications

Print outs of scientific publications

2018

September

Belitskaya-Levy I, Dysken M, Guarino P, Sano M, Asthana S, Vertrees JE, Pallaki M, Llorente M, Love S, Schellenberg G. Impact of apolipoprotein E genotypes on vitamin E and memantine treatment outcomes in Alzheimer's disease. Alzheimers Dement (N Y). 2018 Jul 26;4:344-349.

Bender Ignacio R, Lin LL, Rajdev L, Chiao E. Evolving Paradigms in HIV Malignancies: Review of Ongoing Clinical Trials. J Natl Compr Canc Netw. 2018 Aug;16(8):1018-1026.

Cardozo EF, Apetrei C, Pandrea I, Ribeiro RM. The dynamics of simian immunodeficiency virus after depletion of CD8+ cells. Immunol Rev. 2018 Sep;285(1):26-37.

Chambers LC, Morgan JL, Lowens MS, Robinson TS, Romano SS, Leipertz GL, Hughes JP, Golden MR, Khosropour CM, Fredricks DN, Manhart LE. Cross-sectional study of urethral exposures at last sexual episode associated with non-gonococcal urethritis among STD clinic patients. Sex Transm Infect. 2018 Sep 4.

Juraska M, Magaret CA, Shao J, Carpp LN, Fiore-Gartland AJ, Benkeser D, Girerd-Chambaz Y, Langevin E, Frago C, Guy B, Jackson N, Duong Thi Hue K, Simmons CP, Edlefsen PT, Gilbert PB. Viral genetic diversity and protective efficacy of a tetravalent dengue vaccine in two phase 3 trials. Proc Natl Acad Sci U S A. 2018 Sep 4;115(36):E8378-E8387.

Lee JM, Huddleston J, Doud MB, Hooper KA, Wu NC, Bedford T, Bloom JD. Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants. Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):E8276-E8285.

Montano MA, Dombrowski JC, Dasgupta S, Golden MR, Duerr A, Manhart LE, Barbee LA, Khosropour CM. Changes in Sexual Behavior and STI Diagnoses Among MSM Initiating PrEP in a Clinic Setting. AIDS Behav. 2018 Aug 16.

Mugwanya KK, Irungu E, Bukusi E, Mugo NR, Odoyo J, Wamoni E, Ngure K, Morton JF, Peebles K, Masyuko S, Barnabee G, Donnell D, Barnabas R, Haberer J, O'Malley G, Baeten JM. Scale up of PrEP integrated in public health HIV care clinics: a protocol for a stepped-wedge cluster-randomized rollout in Kenya. Implement Sci. 2018 Sep 4;13(1):118.

Neher RA, Bedford T. Real-time analysis and visualization of pathogen sequence data. J Clin Microbiol. 2018 Aug 22.

O'Connor MA, Tisoncik-Go J, Lewis TB, Miller CJ, Bratt D, Moats CR, Edlefsen PT, Smedley J, Klatt NR, Gale M, Jr., Fuller DH. Early cellular innate immune responses drive Zika viral persistence and tissue tropism in pigtail macaques. Nat Commun. 2018 Aug 22;9(1):3371.

Patricia D'Souza M, Allen MA, Baumblatt JAG, Boggiano C, Crotty S, Grady C, Havenar-Daughton C, Heit A, Hu DJ, Kunwar N, McElrath MJ. Innovative approaches to track lymph node germinal center responses to evaluate development of broadly neutralizing antibodies in human HIV vaccine trials. Vaccine. 2018 Sep 11;36(38):5671-5677.

Reid E, Suneja G, Ambinder RF, Ard K, Baiocchi R, Barta SK, Carchman E, Cohen A, Gupta N, Johung KL, Klopp A, LaCasce AS, Lin C, Makarova-Rusher OV, Mehta A, Menon MP, Morgan D, Nathwani N, Noy A, Palella F, Ratner L, Rizza S, Rudek MA, Taylor J, Tomlinson B, Wang C-CJ, Dwyer MA, Freedman-Cass DA. Cancer in People Living With HIV, Version 1.2018, NCCN Clinical Practice Guidelines in Oncology. J Natl Compr Canc Netw. 2018 Aug;16(8):986-1017.

Salter AI, Ivey RG, Kennedy JJ, Voillet V, Rajan A, Alderman EJ, Voytovich UJ, Lin C, Sommermeyer D, Liu L, Whiteaker JR, Gottardo R, Paulovich AG, Riddell SR. Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function. Sci Signal. 2018 Aug 21;11(544).

Schiffer JT, Swan DA, Prlic M, Lund JM. Herpes simplex virus-2 dynamics as a probe to measure the extremely rapid and spatially localized tissue-resident T-cell response. Immunol Rev. 2018 Sep;285(1):113-133.

Seo S, Xie H, Leisenring WM, Kuypers JM, Sahoo FT, Goyal S, Kimball LE, Campbell AP, Jerome KR, Englund JA, Boeckh M. Risk Factors for Parainfluenza Virus Lower Respiratory Tract Disease after Hematopoietic Cell Transplantation. Biol Blood Marrow Transplant. 2018 Aug 24.

van Rhee F, Voorhees P, Dispenzieri A, Fossa A, Srkalovic G, Ide M, Munshi N, Schey S, Streetly M, Pierson SK, Partridge HL, Mukherjee S, Shilling D, Stone K, Greenway A, Ruth J, Lechowicz MJ, Chandrakasan S, Jayanthan R, Jaffe ES, Leitch H, Pemmaraju N, Chadburn A, Lim MS, Elenitoba-Johnson KS, Krymskaya V, Goodman A, Hoffmann C, Zinzani PL, Ferrero S, Terriou L, Sato Y, Simpson D, Wong R, Rossi J-F, Nasta S, Yoshizaki K, Kurzrock R, Uldrick TS, Casper C, Oksenhendler E, Fajgenbaum DC. International, evidence-based consensus treatment guidelines for idiopathic multicentric Castleman disease. Blood. 2018 Sep 4.

Zhang W, Molehin AJ, Rojo JU, Sudduth J, Ganapathy PK, Kim E, Siddiqui AJ, Freeborn J, Sennoune SR, May J, Lazarus S, Nguyen C, Redman WK, Ahmad G, Torben W, Karmakar S, Le L, Kottapalli KR, Kottapalli P, Wolf RF, Papin JF, Carey D, Gray SA, Bergthold JD, Damian RT, Mayer BT, Marks F, Reed SG, Carter D, Siddiqui AA. Sm-p80-based schistosomiasis vaccine: double-blind preclinical trial in baboons demonstrates comprehensive prophylactic and parasite transmission-blocking efficacy. Ann N Y Acad Sci. 2018 Aug;1425(1):38-51.

August

Agyemang E, Magaret AS, Selke S, Johnston C, Corey L, Wald A. Herpes Simplex Virus Shedding Rate: Surrogate Outcome for Genital Herpes Recurrence Frequency and Lesion Rates, and Phase 2 Clinical Trials End Point for Evaluating Efficacy of Antivirals. J Infect Dis. 2018 Jul 17.
Full-text Article: http://scholars.fhcrc.org/13817/

Barouch DH, Tomaka FL, Wegmann F, Stieh DJ, Alter G, Robb ML, Michael NL, Peter L, Nkolola JP, Borducchi EN, Chandrashekar A, Jetton D, Stephenson KE, Li W, Korber B, Tomaras GD, Montefiori DC, Gray G, Frahm N, McElrath MJ, Baden L, Johnson J, Hutter J, Swann E, Karita E, Kibuuka H, Mpendo J, Garrett N, Mngadi K, Chinyenze K, Priddy F, Lazarus E, Laher F, Nitayapan S, Pitisuttithum P, Bart S, Campbell T, Feldman R, Lucksinger G, Borremans C, Callewaert K, Roten R, Sadoff J, Scheppler L, Weijtens M, Feddes-de Boer K, van Manen D, Vreugdenhil J, Zahn R, Lavreys L, Nijs S, Tolboom J, Hendriks J, Euler Z, Pau MG, Schuitemaker H. Evaluation of a mosaic HIV-1 vaccine in a multicentre, randomised, double-blind, placebo-controlled, phase 1/2a clinical trial (APPROACH) and in rhesus monkeys (NHP 13-19). Lancet. 2018 Jul 21;392(10143):232-243.
Full-text Article: http://scholars.fhcrc.org/13853/

Bhatia S, Miller NJ, Lu H, Vandeven NV, Ibrani D, Shinohara M, Byrd D, Parvathaneni U, Kulikauskas RM, Ter Meulen J, Hsu FJ, Koelle DM, Nghiem P. Intratumoral G100, a TLR4 agonist, induces anti-tumor immune responses and tumor regression in patients with Merkel cell carcinoma. Clin Cancer Res. 2018 Aug 9.
Full-text Article: http://scholars.fhcrc.org/13911/

de Oliveira Otto MC, Lemaitre RN, Song X, King IB, Siscovick DS, Mozaffarian D. Serial measures of circulating biomarkers of dairy fat and total and cause-specific mortality in older adults: the Cardiovascular Health Study. Am J Clin Nutr. 2018 Jul 11.
Full-text Article: http://scholars.fhcrc.org/13829/

Fogel JM, Sandfort T, Zhang Y, Guo X, Clarke W, Breaud A, Cummings V, Hamilton EL, Ogendo A, Kayange N, Panchia R, Dominguez K, Chen YQ, Eshleman SH. Accuracy of Self-Reported HIV Status Among African Men and Transgender Women Who Have Sex with Men Who were Screened for Participation in a Research Study: HPTN 075. AIDS Behav. 2018 Jul 26.
Full-text Article: http://scholars.fhcrc.org/13875/

Golob JL, Stern J, Holte S, Kitahata MM, Crane HM, Coombs RW, Goecker E, Woolfrey AE, Harrington RD. HIV DNA levels and decay in a cohort of 111 long-term virally suppressed patients. AIDS. 2018 Jul 12.
Full-text Article: http://scholars.fhcrc.org/13870/

Hanson DJ, Hill JA, Koelle DM. Advances in the Characterization of the T-Cell Response to Human Herpesvirus-6. Front Immunol. 2018 Jun 25;9:1454
Full-text Article: http://scholars.fhcrc.org/13814/

Hill JA, Myerson D, Marty FM. Case 5-2018: A Man with Confusion after Stem-Cell Transplantation. N Engl J Med. 2018 Jun 28;378(26):2544-5.
Full-text Article: http://scholars.fhcrc.org/13815/

Hughes SM, Ferre AL, Yandura SE, Shetler C, Baker CAR, Calienes F, Levy CN, Astronomo RD, Shu Z, Lentz GM, Fialkow M, Kirby AC, McElrath MJ, Sinclair E, Rohan LC, Anderson PL, Shacklett BL, Dezzutti CS, Gao D, Hladik F. Cryopreservation of human mucosal tissues. PLoS One. 2018 Jul 30;13(7):e0200653.
Full-text Article: http://scholars.fhcrc.org/13880/

Ifekwunigwe JO, Wagner JK, Yu J-H, Harrell TM, Bamshad MJ, Royal CD. A Qualitative Analysis of How Anthropologists Interpret the Race Construct. Am Anthropol. 2017 Sep;119(3):422-434.
Full-text Article: http://scholars.fhcrc.org/13904/

Margolin K, Morishima C, Velcheti V, Miller JS, Lee SM, Silk AW, Holtan SG, Lacroix AM, Fling SP, Kaiser JC, Egan JO, Jones M, Rhode PR, Rock AD, Cheever MA, Wong HC, Ernstoff MS. Phase I Trial of ALT-803, a Novel Recombinant Interleukin-15 Complex, in Patients with Advanced Solid Tumors. Clin Cancer Res. 2018 Jul 25.
Full-text Article: http://scholars.fhcrc.org/13846/

Nemes E, Geldenhuys H, Rozot V, Rutkowski KT, Ratangee F, Bilek N, Mabwe S, Makhethe L, Erasmus M, Toefy A, Mulenga H, Hanekom WA, Self SG, Bekker L-G, Ryall R, Gurunathan S, DiazGranados CA, Andersen P, Kromann I, Evans T, Ellis RD, Landry B, Hokey DA, Hopkins R, Ginsberg AM, Scriba TJ, Hatherill M. Prevention of M. tuberculosis Infection with H4:IC31 Vaccine or BCG Revaccination. N Engl J Med. 2018 Jul 12;379(2):138-149.
Full-text Article: http://scholars.fhcrc.org/13796/

Noto A, Procopio FA, Banga R, Suffiotti M, Corpataux J-M, Cavassini M, Fenwick C, Gottardo R, Perreau M, Pantaleo G. CD32(+) and PD-1(+) Lymph Node CD4 T Cells Support Persistent HIV-1 Transcription in Treated Aviremic Individuals. J Virol. 2018 Jul 5.
Full-text Article: http://scholars.fhcrc.org/13803/

Ogimi C, Xie H, Leisenring WM, Kuypers JM, Jerome KR, Campbell AP, Englund JA, Boeckh M, Waghmare A. Initial high viral load is associated with prolonged shedding of human rhinovirus in allogeneic hematopoietic cell transplant recipients. Biol Blood Marrow Transplant. 2018 Aug 7.
Full-text Article: http://scholars.fhcrc.org/13838/

Okoye AA, Hansen SG, Vaidya M, Fukazawa Y, Park H, Duell DM, Lum R, Hughes CM, Ventura AB, Ainslie E, Ford JC, Morrow D, Gilbride RM, Legasse AW, Hesselgesser J, Geleziunas R, Li Y, Oswald K, Shoemaker R, Fast R, Bosche WJ, Borate BR, Edlefsen PT, Axthelm MK, Picker LJ, Lifson JD. Early antiretroviral therapy limits SIV reservoir establishment to delay or prevent post-treatment viral rebound. Nat Med. 2018 Aug 6.
Full-text Article: http://scholars.fhcrc.org/13908/

Phan T, Zerr DM, Boussiotis V, Lusso P, Di Luca D. Considerations on human herpesvirus 6 reactivation after cord blood transplantation. Am J Hematol. 2018 Jul 9.
Full-text Article: http://scholars.fhcrc.org/13813/

Pyra M, Brown ER, Haberer JE, Heffron R, Celum C, Bukusi EA, Asiimwe S, Katabira E, Mugo NR, Baeten JM. Patterns of Oral PrEP Adherence and HIV Risk Among Eastern African Women in HIV Serodiscordant Partnerships. AIDS Behav. 2018 Jul 13.
Full-text Article: http://scholars.fhcrc.org/13830/

Roychoudhury P, De Silva Feelixge H, Reeves D, Mayer BT, Stone D, Schiffer JT, Jerome KR. Viral diversity is an obligate consideration in CRISPR/Cas9 designs for targeting the HIV reservoir. BMC Biol. 2018 Jul 11;16(1):75.
Full-text Article: http://scholars.fhcrc.org/13798/

Schiffer JT, Swan DA, Roychoudhury P, Lund JM, Prlic M, Zhu J, Wald A, Corey L. A Fixed Spatial Structure of CD8(+) T Cells in Tissue during Chronic HSV-2 Infection. J Immunol. 2018 Sep 1;201(5):1522-1535.
Full-text Article: http://scholars.fhcrc.org/13847/

Taneva E, Sinclair S, Mesquita PM, Weinrick B, Cameron SA, Cheshenko N, Reagle K, Frank B, Srinivasan S, Fredricks D, Keller MJ, Herold BC. Vaginal microbiome modulates topical antiretroviral drug pharmacokinetics. JCI Insight. 2018 Jul 12;3(13).
Full-text Article: http://scholars.fhcrc.org/13799/

Van Wagoner N, Fife K, Leone PA, Bernstein DI, Warren T, Panther L, Novak RM, Beigi R, Kriesel J, Tyring S, Koltun W, Lucksinger G, Morris A, Zhang B, McNeil LK, Tasker S, Hetherington S, Wald A. Effects of Different Doses of GEN-003, a Therapeutic Vaccine for Genital HSV-2, on Viral Shedding and Lesions: Results of a Randomized Placebo-controlled Trial. J Infect Dis. 2018 Jul 6.
Full-text Article: http://scholars.fhcrc.org/13809/

Virnik K, Nesti E, Dail C, Scanlan A, Medvedev A, Vassell R, McGuire AT, Stamatatos L, Berkower I. Live rubella vectors can express native HIV envelope glycoproteins targeted by broadly neutralizing antibodies and prime the immune response to an envelope protein boost. Vaccine. 2018 Aug 16;36(34):5166-5172.
Full-text Article: http://scholars.fhcrc.org/13865/

Zhang Y, Sivay MV, Hudelson SE, Clarke W, Breaud A, Wang J, Piwowar-Manning E, Agyei Y, Fogel JM, Hamilton EL, Selin A, MacPhail C, Kahn K, Gomez-Olive FX, Hughes JP, Pettifor A, Eshleman SH. Antiretroviral Drug Use and HIV Drug Resistance Among Young Women in Rural South Africa: HPTN 068. J Acquir Immune Defic Syndr. 2018 Jul 3.
Full-text Article: http://scholars.fhcrc.org/13811/

July

Avey S, Cheung F, Fermin D, Frelinger J, Gaujoux R, Gottardo R, Khatri P, Kleinstein SH, Kotliarov Y, Meng H, Sauteraud R, Shen-Orr SS, Tsang JS, Vallania F, Anguiano E, Baisch J, Baldwin N, Belshe RB, Blevins TP, Chaussabel D, Davis MM, Fikrig E, Grill DE, Hafler DA, Henrich E, Joshi SR, Kaech SM, Kennedy RB, Mohanty S, Montgomery RR, Oberg AL, Obermoser G, Ovsyannikova IG, Palucka AK, Pascual V, Poland GA, Pulendran B, Reinherz EL, Shaw AC, Siconolfi B, Stuart KD, Tsang S, Ueda I, Wilson J, Zapata HJ. Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses. Sci Immunol. 2017 Aug 25;2(14).
Full-text Article: http://scholars.fhcrc.org/13794/

Bekker L-G, Moodie Z, Grunenberg N, Laher F, Tomaras GD, Cohen KW, Allen M, Malahleha M, Mngadi K, Daniels B, Innes C, Bentley C, Frahm N, Morris DE, Morris L, Mkhize NN, Montefiori DC, Sarzotti-Kelsoe M, Grant S, Yu C, Mehra VL, Pensiero MN, Phogat S, DiazGranados CA, Barnett SW, Kanesa-Thasan N, Koutsoukos M, Michael NL, Robb ML, Kublin JG, Gilbert PB, Corey L, Gray GE, McElrath MJ. Subtype C ALVAC-HIV and bivalent subtype C gp120/MF59 HIV-1 vaccine in low-risk, HIV-uninfected, South African adults: a phase 1/2 trial. Lancet HIV. 2018 Jun 8.
Full-text Article: http://scholars.fhcrc.org/13698/

Boucoiran I, Mayer BT, Krantz EM, Marchant A, Pati S, Boppana S, Wald A, Corey L, Casper C, Schiffer JT, Gantt S. Nonprimary Maternal Cytomegalovirus Infection After Viral Shedding in Infants. Pediatr Infect Dis J. 2018 Jul;37(7):627-631.
Full-text Article: http://scholars.fhcrc.org/13711/

Chen P, Guarino PD, Dysken MW, Pallaki M, Asthana S, Llorente MD, Love S, Vertrees JE, Schellenberg GD, Sano M. Neuropsychiatric Symptoms and Caregiver Burden in Individuals With Alzheimer's Disease: The TEAM-AD VA Cooperative Study. J Geriatr Psychiatry Neurol. 2018 Jan 1:891988718783897.
Full-text Article: http://scholars.fhcrc.org/13789/

Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P. Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak. Nat Commun. 2018 Jun 8;9(1):2222.
Full-text Article: http://scholars.fhcrc.org/13710/

Ferris RL, Saba NF, Gitlitz BJ, Haddad R, Sukari A, Neupane P, Morris JC, Misiukiewicz K, Bauman JE, Fenton M, Jimeno A, Adkins DR, Schneider CJ, Sacco AG, Shirai K, Bowles DW, Gibson M, Nwizu T, Gottardo R, Manjarrez KL, Dietsch GN, Bryan JK, Hershberg RM, Cohen EEW. Effect of Adding Motolimod to Standard Combination Chemotherapy and Cetuximab Treatment of Patients With Squamous Cell Carcinoma of the Head and Neck: The Active8 Randomized Clinical Trial. JAMA Oncol. 2018 Jun 21.
Full-text Article: http://scholars.fhcrc.org/13760/

Fullman N, Yearwood J, GBD 2016 Healthcare Access and Quality Collaborators, Murray CJL, Lozano R. Measuring performance on the Healthcare Access and Quality Index for 195 countries and territories and selected subnational locations: a systematic analysis from the Global Burden of Disease Study 2016. Lancet. 2018 Jun 2;391(10136):2236-2271.
Full-text Article: http://scholars.fhcrc.org/13754/

Greninger AL, Roychoudhury P, Xie H, Casto A, Cent A, Pepper G, Koelle DM, Huang M-L, Wald A, Johnston C, Jerome KR. Ultrasensitive Capture of Human Herpes Simplex Virus Genomes Directly from Clinical Samples Reveals Extraordinarily Limited Evolution in Cell Culture. mSphere. 2018 Jun 13;3(3).
Full-text Article: http://scholars.fhcrc.org/13700/

Hill JA, Pergam SA, Boeckh M, Milano F. Reply to author. Biol Blood Marrow Transplant. 2018 Jun 30.
Full-text Article: http://scholars.fhcrc.org/13791/

Hladish TJ, Pearson CAB, Patricia Rojas D, Gomez-Dantes H, Halloran ME, Vazquez-Prokopec GM, Longini IM. Forecasting the effectiveness of indoor residual spraying for reducing dengue burden. PLoS Negl Trop Dis. 2018 Jun 25;12(6):e0006570.
Full-text Article: http://scholars.fhcrc.org/13770/

Iketani S, Shean RC, Ferren M, Makhsous N, Aquino DB, des Georges A, Rima B, Mathieu C, Porotto M, Moscona A, Greninger AL. Viral Entry Properties Required for Fitness in Humans Are Lost through Rapid Genomic Change during Viral Isolation. MBio. 2018 Jul 3;9(4).
Full-text Article: http://scholars.fhcrc.org/13777/

Kasemeier-Kulesa JC, Schnell S, Woolley T, Spengler JA, Morrison JA, McKinney MC, Pushel I, Wolfe LA, Kulesa PM. Predicting neuroblastoma using developmental signals and a logic-based model. Biophys Chem. 2018 Jul;238:30-38.
Full-text Article: http://scholars.fhcrc.org/13752/

Liu AY, De Rosa SC, Guthrie BL, Choi RY, Kerubo-Bosire R, Richardson BA, Kiarie J, Farquhar C, Lohman-Payne B. High background in ELISpot assays is associated with elevated levels of immune activation in HIV-1-seronegative individuals in Nairobi. Immun Inflamm Dis. 2018 Jul 4.
Full-text Article: http://scholars.fhcrc.org/13779/

Lun ATL, Pages HA, Smith ML. beachmat: A Bioconductor C plus plus API for accessing high-throughput biological data from a variety of R matrix types. PLoS Comput Biol. 2018 May 3;14(5):e1006135.
Full-text Article: http://scholars.fhcrc.org/13793/

Montgomery BEE, Frew PM, Hughes JP, Wang J, Adimora AA, Haley DF, Kuo I, Jennings L, El-Bassel N, Hodder SL. HIV Risk Characteristics Associated with Violence Against Women: A Longitudinal Study Among Women in the United States. J Womens Health (Larchmt). 2018 Jun 15.
Full-text Article: http://scholars.fhcrc.org/13738/

Pyra M, Anderson PL, Hendrix CW, Heffron R, Mugwanya K, Haberer JE, Thomas KK, Celum C, Donnell D, Marzinke MA, Bukusi EA, Mugo NR, Asiimwe S, Katabira E, Baeten JM. Tenofovir and tenofovir-diphosphate concentrations during pregnancy among HIV-uninfected women using oral pre-exposure prophylaxis. AIDS. 2018 Jun 11.
Full-text Article: http://scholars.fhcrc.org/13696/

Rothen J, Murie C, Carnes J, Anupama A, Abdulla S, Chemba M, Mpina M, Tanner M, Lee Sim BK, Hoffman SL, Gottardo R, Daubenberger C, Stuart K. Whole blood transcriptome changes following controlled human malaria infection in malaria pre-exposed volunteers correlate with parasite prepatent period. PLoS One. 2018 Jun 19;13(6):e0199392.
Full-text Article: http://scholars.fhcrc.org/13723/

Shipley MM, Renner DW, Ott M, Bloom DC, Koelle DM, Johnston C, Szpara ML. Genome-Wide Surveillance of Genital Herpes Simplex Virus Type 1 From Multiple Anatomic Sites Over Time. J Infect Dis. 2018 Jul 13;218(4):595-605.
Full-text Article: http://scholars.fhcrc.org/13726/

Sivay MV, Hudelson SE, Wang J, Agyei Y, Hamilton EL, Selin A, Dennis A, Kahn K, Gomez-Olive FX, MacPhail C, Hughes JP, Pettifor A, Eshleman SH, Grabowski MK. HIV-1 diversity among young women in rural South Africa: HPTN 068. PLoS One. 2018 Jul 5;13(7):e0198999.
Full-text Article: http://scholars.fhcrc.org/13781/

Sridhar S, Luedtke A, Langevin E, Zhu M, Bonaparte M, Machabert T, Savarino S, Zambrano B, Moureau A, Khromava A, Moodie Z, Westling T, Mascarenas C, Frago C, Cortes M, Chansinghakul D, Noriega F, Bouckenooghe A, Chen J, Ng S-P, Gilbert PB, Gurunathan S, DiazGranados CA. Effect of Dengue Serostatus on Dengue Vaccine Safety and Efficacy. N Engl J Med. 2018 Jun 13.
Full-text Article: http://scholars.fhcrc.org/13697/

Sun L, Talarico S, Yao L, He L, Self S, You Y, Zhang H, Zhang Y, Guo Y, Liu G, Salama NR, Zhang J. Droplet Digital PCR detection of Helicobacter pylori clarithromycin resistance reveals frequent heteroresistance. J Clin Microbiol. 2018 Jun 20.
Full-text Article: http://scholars.fhcrc.org/13733/

Tan N, Sharma M, Winer R, Galloway D, Rees H, Barnabas RV. Model-estimated effectiveness of single dose 9-valent HPV vaccination for HIV-positive and HIV-negative females in South Africa. Vaccine. 2018 Jun 8.
Full-text Article: http://scholars.fhcrc.org/13714/

Yacoob C, Lange MD, Cohen K, Lathia K, Feng J, Glenn J, Carbonetti S, Oliver B, Vigdorovich V, Sather DN, Stamatatos L. B cell clonal lineage alterations upon recombinant HIV-1 envelope immunization of rhesus macaques. PLoS Pathog. 2018 Jun 22;14(6):e1007120.
Full-text Article: http://scholars.fhcrc.org/13767/

Yarchoan R, Uldrick TS. HIV-Associated Cancers and Related Diseases. N Engl J Med. 2018 May 31;378(22):2145.
Full-text Article: http://scholars.fhcrc.org/13722/

Yu T, Wu L, Gilbert P. New approaches for censored longitudinal data in joint modelling of longitudinal and survival data, with application to HIV vaccine studies. Lifetime Data Anal. 2018 Jun 8.
Full-text Article: http://scholars.fhcrc.org/13759/

Zarnitsyna VI, Bulusheva I, Handel A, Longini IM, Halloran ME, Antia R. Intermediate levels of vaccination coverage may minimize seasonal influenza outbreaks. PLoS One. 2018 Jun 26;13(6):e0199674.
Full-text Article: http://scholars.fhcrc.org/13756/

June

Dyer TV, Khan MR, Regan R, Harawa NT, Nelson LE, Wilton L, Wang L, Peng L, San Ou S, Shoptaw S. Differential Patterns of Risk and Vulnerability Suggest the Need for Novel Prevention Strategies for Black Bisexual Men in the HPTN 061 Study. J Acquir Immune Defic Syndr. 2018 May 10.
Full-text Article: http://scholars.fhcrc.org/13616/

Engen RM, Huang M-L, Park GE, Smith JM, Limaye AP. Prospective Assessment of Adenovirus Infection in Pediatric Kidney Transplant Recipients. Transplantation. 2018 Jul;102(7):1165-1171.
Full-text Article: http://scholars.fhcrc.org/13620/

Fitzmaurice C, Akinyemiju TF, Al Lami FH, Alam T, Alizadeh-Navaei R, Allen C, Alsharif U, Alvis-Guzman N, Amini E, Anderson BO, Aremu O, Artaman A, Asgedom SW, Assadi R, Atey TM, Avila-Burgos L, Awasthi A, Ba Saleem HO, Barac A, Bennett JR, Bensenor IM, Bhakta N, Brenner H, Cahuana-Hurtado L, Castaneda-Orjuela CA, Catala-Lopez F, Choi J-YJ, Christopher DJ, Chung S-C, Curado MP, Dandona L, Dandona R, das Neves J, Dey S, Dharmaratne SD, Doku DT, Driscoll TR, Dubey M, Ebrahimi H, Edessa D, El-Khatib Z, Endries AY, Fischer F, Force LM, Foreman KJ, Gebrehiwot SW, Gopalani SV, Grosso G, Gupta R, Gyawali B, Hamadeh RR, Hamidi S, Harvey J, Hassen HY, Hay RJ, Hay SI, Heibati B, Hiluf MK, Horita N, Hosgood HD, Ilesanmi OS, Innos K, Islami F, Jakovljevic MB, Johnson SC, Jonas JB, Kasaeian A, Kassa TD, Khader YS, Khan EA, Khan G, Khang Y-H, Khosravi MH, Khubchandani J, Kopec JA, Kumar GA, Kutz M, Lad DP, Lafranconi A, Lan Q, Legesse Y, Leigh J, Linn S, Lunevicius R, Majeed A, Malekzadeh R, Malta DC, Mantovani LG, McMahon BJ, Meier T, Melaku YA, Melku M, Memiah P, Mendoza W, Meretoja TJ, Mezgebe HB, Miller TR, Mohammed S, Mokdad AH, Moosazadeh M, Moraga P, Mousavi SM, Nangia V, Nguyen CT, Nong VM, Ogbo FA, Olagunju AT, Pa M, Park E-K, Patel T, Pereira DM, Pishgar F, Postma MJ, Pourmalek F, Qorbani M, Rafay A, Rawaf S, Rawaf DL, Roshandel G, Safiri S, Salimzadeh H, Sanabria JR, Santric Milicevic MM, Sartorius B, Satpathy M, Sepanlou SG, Shackelford KA, Shaikh MA, Sharif-Alhoseini M, She J, Shin M-J, Shiue I, Shrime MG, Sinke AH, Sisay M, Sligar A, Sufiyan MB, Sykes BL, Tabares-Seisdedos R, Tessema GA, Topor-Madry R, Tran TT, Tran BX, Ukwaja KN, Vlassov VV, Vollset SE, Weiderpass E, Williams HC, Yimer NB, Yonemoto N, Younis MZ, Murray CJL, Naghavi M. Global, Regional, and National Cancer Incidence, Mortality, Years of Life Lost, Years Lived With Disability, and Disability-Adjusted Life-Years for 29 Cancer Groups, 1990 to 2016: A Systematic Analysis for the Global Burden of Disease Study. JAMA Oncol. 2018 Jun 2.
Full-text Article: http://scholars.fhcrc.org/13661/

Gebe JA, Preisinger A, Gooden MD, D'Amico LA, Vernon RB. Local, Controlled Release In Vivo of Vascular Endothelial Growth Factor Within a Subcutaneous Scaffolded Islet Implant Reduces Early Islet Necrosis and Improves Performance of the Graft. Cell Transplant. 2018 Mar;27(3):531-541.
Full-text Article: http://scholars.fhcrc.org/13618/

Golovaty I, Sharma M, Van Heerden A, van Rooyen H, Baeten JM, Celum C, Barnabas RV. Cost of integrating non-communicable disease screening into home-based HIV testing and counseling in South Africa. J Acquir Immune Defic Syndr. 2018 May 10.
Full-text Article: http://scholars.fhcrc.org/13603/

Hadfield J, Megill C, Bell SM, Huddleston J, Potter B, Callender C, Sagulenko P, Bedford T, Neher RA. Nextstrain: real-time tracking of pathogen evolution. Bioinformatics. 2018 May 22.
Full-text Article: http://scholars.fhcrc.org/13628/

Hill JA, Pergam SA, Cox E, Xie H, Leisenring WM, Boeckh M, Delaney C, Milano F. A Modified Intensive Strategy to Prevent CMV Disease in Seropositive Umbilical Cord Blood Transplant Recipients. Biol Blood Marrow Transplant. 2018 May 16.
Full-text Article: http://scholars.fhcrc.org/13607/

Horne DJ, Jones BE, Kamada A, Fukushima K, Winthrop KL, Siegel SAR, Kovacs A, Anthony P, Meekin KA, Bhat S, Kerndt P, Chang A, Koelle DM, Narita M. Multicenter study of QuantiFERON®-TB Gold Plus in patients with active tuberculosis. Int J Tuberc Lung Dis. 2018 Jun 1;22(6):617-621.
Full-text Article: http://scholars.fhcrc.org/13664/

Justman JE, Nair GL, Hendrix CW, Piper JM, Marzinke MA, Dai JY, Pan Z, Galaska B, Levy L, Schwartz JL, Balar B, Kunjara Na Ayudhya RP, Mushamiri I, McGowan I, Dezzutti CS. Pharmacokinetics and Pharmacodynamics of Tenofovir Reduced-Glycerin 1% Gel in the Rectal and Vaginal Compartments in Women: A Cross-Compartmental Study With Directly Observed Dosing. J Acquir Immune Defic Syndr. 2018 Jun 1;78(2):175-182.
Full-text Article: http://scholars.fhcrc.org/13601/

Kilburn K, Ranganathan M, Stoner MCD, Hughes JP, Macphail C, Agyei Y, Gomez-Olive FX, Kahn K, Pettifor A. Transactional sex and incident HIV infection in a cohort of young women from rural South Africa enrolled in HPTN 068. AIDS. 2018 May 11.
Full-text Article: http://scholars.fhcrc.org/13624/

Lu DR, McDavid AN, Kongpachith S, Lingampalli N, Glanville J, Ju C-H, Gottardo R, Robinson WH. T cell-dependent affinity maturation and innate immune pathways differentially drive autoreactive B cell responses in rheumatoid arthritis. Arthritis Rheumatol. 2018 May 31.
Full-text Article: http://scholars.fhcrc.org/13657/

Mullane KM, Winston DJ, Nooka A, Morris MI, Stiff P, Dugan MJ, Holland H, Gregg K, Adachi JA, Pergam SA, Alexander BD, Dubberke ER, Broyde N, Gorbach SL, Sears PS. A Randomized, Placebo-Controlled Trial of Fidaxomicin for Prophylaxis of Clostridium difficile Associated Diarrhea in Adults undergoing Hematopoietic Stem Cell Transplantation. Clin Infect Dis. 2018 Jun 9.
Full-text Article: http://scholars.fhcrc.org/13695/

Ogimi C, Krantz EM, Golob JL, Waghmare A, Liu C, Leisenring WM, Woodard CR, Marquis S, Kuypers JM, Jerome KR, Pergam SA, Fredricks DN, Sorror ML, Englund JA, Boeckh M. Antibiotic Exposure Prior to Respiratory Viral Infection is Associated with Progression to Lower Respiratory Tract Disease in Allogeneic Hematopoietic Cell Transplant Recipients. Biol Blood Marrow Transplant. 2018 May 16.
Full-text Article: http://scholars.fhcrc.org/13630/

Phan TL, Pritchett JC, Leifer C, Zerr DM, Koelle DM, Di Luca D, Lusso P. HHV-6B infection, T-cell reconstitution, and graft-vs-host disease after hematopoietic stem cell transplantation. Bone Marrow Transplant. 2018 May 24.
Full-text Article: http://scholars.fhcrc.org/13655/

Stoner MC, Edwards JK, Miller WC, Aiello AE, Halpern CT, Julien A, Rucinski KB, Selin A, Twine R, Hughes JP, Wang J, Agyei Y, Gomez-Olive FX, Wagner RG, Laeyendecker O, Macphail C, Kahn K, Pettifor A. Does partner selection mediate the relationship between school attendance and HIV/HSV-2 among adolescent girls and young women in South Africa: An analysis of HPTN 068 data. J Acquir Immune Defic Syndr. 2018 May 22.
Full-text Article: http://scholars.fhcrc.org/13640/

Sudom A, Talreja S, Danao J, Bragg E, Kegel R, Min X, Sharkov N, Marcora E, Thibault S, Bradley J, Wood S, Lim A-C, Chen H, Wang S, Foltz IN, Sambashivan S, Wang Z. Molecular basis for the loss-of-function effects of the Alzheimer's disease-associated R47H variant of the immune receptor TREM2. J Biol Chem. 2018 May 24.
Full-text Article: http://scholars.fhcrc.org/13646/

Van P, Jiang W, Gottardo R, Finak G. ggCyto: Next Generation Open-Source Visualization Software for Cytometry. Bioinformatics. 2018 Jun 1.
Full-text Article: http://scholars.fhcrc.org/13672/

Vora SB, Brothers AW, Waghmare A, Englund JA. Antiviral combination therapy for cytomegalovirus infection in high-risk infants. Antivir Ther. 2018 May 23.
Full-text Article: http://scholars.fhcrc.org/13629/

Winston DJ, Mullane KM, Cornely OA, Boeckh MJ, Brown JW, Pergam SA, Trociukas I, Zak P, Craig MD, Papanicolaou GA, Velez JD, Panse J, Hurtado K, Fernsler DA, Stek JE, Pang L, Su S-C, Zhao Y, Chan ISF, Kaplan SS, Parrino J, Lee I, Popmihajlov Z, Annunziato PW, Arvin A. Inactivated varicella zoster vaccine in autologous haemopoietic stem-cell transplant recipients: an international, multicentre, randomised, double-blind, placebo-controlled trial. Lancet. 2018 May 26;391(10135):2116-2127.
Full-text Article: http://scholars.fhcrc.org/13659/

Zhang Y, Fogel JM, Guo X, Clarke W, Breaud A, Cummings V, Hamilton EL, Ogendo A, Kayange N, Panchia R, Dominguez K, Chen YQ, Sandfort T, Eshleman SH. Antiretroviral drug use and HIV drug resistance among MSM and transgender women in sub-Saharan Africa. AIDS. 2018 Jun 19;32(10):1301-1306.
Full-text Article: http://scholars.fhcrc.org/13647/

May

Andu E, Wagenaar BH, Kemp CG, Nevin PE, Simoni JM, Andrasik M, Cohn SE, French AL, Rao D. Risk and protective factors of posttraumatic stress disorder among African American women living with HIV. AIDS Care. 2018 Apr 26:1-7.
Full-text Article: http://scholars.fhcrc.org/13496/

Bradley J, Floyd S, Piwowar-Manning E, Laeyendecker O, Young A, Bell-Mandla N, Bwalya J, Bock P, Fidler S, Ayles H, Hayes RJ. Sexually Transmitted Bedfellows: Exquisite Association between HIV and HSV2 in 21 Communities in Southern Africa in the HPTN 071 (PopART) Study. J Infect Dis. 2018 Apr 6.
Full-text Article: http://scholars.fhcrc.org/13484/

Bricker JB, Sridharan V, Zhu Y, Mull KE, Heffner JL, Watson NL, McClure JB, Di C. Trajectories of 12-Month Usage Patterns for Two Smoking Cessation Websites: Exploring How Users Engage Over Time. J Med Internet Res. 2018 Apr 20;20(4):e10143.
Full-text Article: http://scholars.fhcrc.org/13505/

de Montigny S, Adamson BJS, Masse BR, Garrison LP,  Jr., Kublin JG, Gilbert PB, Dimitrov DT. Projected effectiveness and added value of HIV vaccination campaigns in South Africa: A modeling study. Sci Rep. 2018 Apr 17;8(1):6066.
Full-text Article: http://scholars.fhcrc.org/13464/

Dosenovic P, Kara EE, Pettersson A-K, McGuire AT, Gray M, Hartweger H, Thientosapol ES, Stamatatos L, Nussenzweig MC. Anti-HIV-1 B cell responses are dependent on B cell precursor frequency and antigen-binding affinity. Proc Natl Acad Sci U S A. 2018 May 1;115(18):4743-4748.
Full-text Article: http://scholars.fhcrc.org/13466/

Huang Y, Karuna S, Carpp LN, Reeves D, Pegu A, Seaton K, Mayer K, Schiffer J, Mascola J, Gilbert PB. Modeling Cumulative Overall Prevention Efficacy for the VRC01 Phase 2b Efficacy Trials. Hum Vaccin Immunother. 2018 Apr 23:1-12.
Full-text Article: http://scholars.fhcrc.org/13504/

Janes H, Corey L, Ramjee G, Carpp LN, Lombard C, Cohen MS, Gilbert PB, Gray GE. Weighing the evidence of efficacy of oral PrEP for HIV prevention in women in southern Africa. AIDS Res Hum Retroviruses. 2018 May 6.
Full-text Article: http://scholars.fhcrc.org/13579/

Layton ED, Yu KKQ, Smith MT, Scriba TJ, De Rosa SC, Seshadri C. Validation of a CD1b tetramer assay for studies of human mycobacterial infection or vaccination. J Immunol Methods. 2018 Jul;458:44-52.
Full-text Article: http://scholars.fhcrc.org/13511/

Lee CS, Lee AY, Akileswaran L, Stroman D, Najafi-Tagol K, Kleiboeker S, Chodosh J, Magaret A, Wald A, Van Gelder RN. Determinants of Outcomes of Adenoviral Keratoconjunctivitis. Ophthalmology. 2018 Mar 27.
Full-text Article: http://scholars.fhcrc.org/13415/

Lee U, Sun Y, Scheike TH, Gilbert PB. Analysis of generalized semiparametric regression models for cumulative incidence functions with missing covariates. Computational Statistics & Data Analysis. 2018;122:59-79.
Full-text Article: http://scholars.fhcrc.org/13459/

MacAllister TJ, Stohs E, Liu C, Bryan A, Whimbley E, Phipps A, Pergam SA. 10-year trends in vancomycin-resistant Enterococci among allogeneic hematopoietic cell transplant recipients. J Infect. 2018 May 7.
Full-text Article: http://scholars.fhcrc.org/13566/

Peterson CW, Wang J, Deleage C, Reddy S, Kaur J, Polacino P, Reik A, Huang M-L, Jerome KR, Hu S-L, Holmes MC, Estes JD, Kiem H-P. Differential impact of transplantation on peripheral and tissue-associated viral reservoirs: Implications for HIV gene therapy. PLoS Pathog. 2018 Apr 19;14(4):e1006956.
Full-text Article: http://scholars.fhcrc.org/13474/

Phan TL, Carlin K, Ljungman P, Politikos I, Boussiotis V, Boeckh M, Shaffer ML, Zerr DM. Human Herpesvirus-6B (HHV-6B) Reactivation is a Risk Factor for Grade 2-4 Acute Graft-Versus-Host Disease (aGVHD) after Hematopoietic Stem Cell Transplantation (HCT): a Systematic Review and Meta-Analysis. Biol Blood Marrow Transplant. 2018 Apr 21.
Full-text Article: http://scholars.fhcrc.org/13521/

Price BL, Gilbert PB, van der Laan MJ. Estimation of the optimal surrogate based on a randomized trial. Biometrics. 2018 Apr 27.
Full-text Article: http://scholars.fhcrc.org/13539/

Snijder J, Ortego MS, Weidle C, Stuart AB, Gray MD, McElrath MJ, Pancera M, Veesler D, McGuire AT. An Antibody Targeting the Fusion Machinery Neutralizes Dual-Tropic Infection and Defines a Site of Vulnerability on Epstein-Barr Virus. Immunity. 2018 Apr 17;48(4):799-811.e9.
Full-text Article: http://scholars.fhcrc.org/13471/

Spicknall IH, Looker KJ, Gottlieb SL, Chesson HW, Schiffer JT, Elmes J, Boily M-C. Review of mathematical models of HSV-2 vaccination: Implications for vaccine development. Vaccine. 2018 Apr 3.
Full-text Article: http://scholars.fhcrc.org/13448/

Stohs EJ, MacAllister T, Pergam SA, Krantz EM, Jain R, Sweet A, Liu C. Unintended Consequences of Pretransplant Vancomycin-Resistant Enterococcus Screening on Antimicrobial Stewardship Among Allogeneic Hematopoietic Cell Transplant Recipients. Infect Control Hosp Epidemiol. 2018 Jun;39(6):730-733.
Full-text Article: http://scholars.fhcrc.org/13391/

Thompson EA, Ols S, Miura K, Rausch K, Narum DL, Spangberg M, Juraska M, Wille-Reece U, Weiner A, Howard RF, Long CA, Duffy PE, Johnston L, O'Neil CP, Lore K. TLR-adjuvanted nanoparticle vaccines differentially influence the quality and longevity of responses to malaria antigen Pfs25. JCI Insight. 2018 May 17;3(10).
Full-text Article: http://scholars.fhcrc.org/13597/

Vande Vusse LK, Wurfel MM, Madtes DM, Schoch HG, Harju-Baker S, Hill JA, Jerome KR, Boeckh M, Watkins TR. Alveolar levels of immuno-inflammatory mediators in diffuse alveolar hemorrhage after allogeneic transplant. Bone Marrow Transplant. 2018 Apr 18.
Full-text Article: http://scholars.fhcrc.org/13490/

Wen Y, Trinh HV, Linton CE, Tani C, Norais N, Martinez-Guzman D, Ramesh P, Sun Y, Situ F, Karaca-Griffin S, Hamlin C, Onkar S, Tian S, Hilt S, Malyala P, Lodaya R, Li N, Otten G, Palladino G, Friedrich K, Aggarwal Y, LaBranche C, Duffy R, Shen X, Tomaras GD, Montefiori DC, Fulp W, Gottardo R, Burke B, Ulmer JB, Zolla-Pazner S, Liao H-X, Haynes BF, Michael NL, Kim JH, Rao M, O'Connell RJ, Carfi A, Barnett SW. Generation and characterization of a bivalent protein boost for future clinical trials: HIV-1 subtypes CR01_AE and B gp120 antigens with a potent adjuvant. PLoS One. 2018 Apr 26;13(4):e0194266.
Full-text Article: http://scholars.fhcrc.org/13497/

Wood LF, Brown BP, Lennard K, Karaoz U, Havyarimana E, Passmore J-AS, Hesseling AC, Edlefsen PT, Kuhn L, Mulder N, Brodie EL, Sodora DL, Jaspan HB. Feeding-related gut microbial composition associates with peripheral T cell activation and mucosal gene expression in African infants. Clin Infect Dis. 2018 Apr 5.
Full-text Article: http://scholars.fhcrc.org/13482/

April

Bisanzio D, Dzul-Manzanilla F, Gomez-Dantes H, Pavia-Ruz N, Hladish TJ, Lenhart A, Palacio-Vargas J, Gonzalez Roldan JF, Correa-Morales F, Sanchez-Tejeda G, Kuri Morales P, Manrique-Saide P, Longini IM, Halloran ME, Vazquez-Prokopec GM. Spatio-temporal coherence of dengue, chikungunya and Zika outbreaks in Merida, Mexico. PLoS Negl Trop Dis. 2018 Mar 15;12(3):e0006298.
Full-text Article: http://scholars.fhcrc.org/13315/

Collett BR, Leroux BG, Wallace ER, Gallagher E, Shao J, Speltz ML. Head shape at 36 months with and without helmeting Response. Journal of Neurosurgery-Pediatrics. 2018;21(3):202-203.
Full-text Article: http://scholars.fhcrc.org/13379/
PubMed Record: N/A

Dean NE, Halloran ME, Longini IM. Design of vaccine trials during outbreaks with and without a delayed vaccination comparator. Ann Appl Stat. 2018 Mar;12(1):330-347.
Full-text Article: http://scholars.fhcrc.org/13420/

Dietrich JJ, Lazarus E, Andrasik M, Hornschuh S, Otwombe K, Morgan C, Isaacs AJ, Huang Y, Laher F, Kublin JG, Gray GE. Mobile Phone Questionnaires for Sexual Risk Data Collection Among Young Women in Soweto, South Africa. AIDS Behav. 2018 Mar 29.
Full-text Article: http://scholars.fhcrc.org/13388/

Dominguez Islas C, Rice KM. Addressing the estimation of standard errors in fixed effects meta-analysis. Stat Med. 2018 Mar 25.
Full-text Article: http://scholars.fhcrc.org/13403/

Figueroa DB, Tillotson J, Li M, Piwowar-Manning E, Hendrix CW, Holtz TH, Bokoch K, Bekker L-G, van Griensven F, Mannheimer S, Hughes JP, Grant RM, Bumpus NN. Discovery of genetic variants of the kinases that activate tenofovir among individuals in the United States, Thailand, and South Africa: HPTN067. PLoS One. 2018 Apr 11;13(4):e0195764.
Full-text Article: http://scholars.fhcrc.org/13438/

Fiore-Gartland A, Carpp LN, Naidoo K, Thompson E, Zak DE, Self S, Churchyard G, Walzl G, Penn-Nicholson A, Scriba TJ, Hatherill M. Considerations for biomarker-targeted intervention strategies for tuberculosis disease prevention. Tuberculosis (Edinb). 2018 Mar;109:61-68.
Full-text Article: http://scholars.fhcrc.org/13346/

Greninger AL, Knudsen GM, Roychoudhury P, Hanson DJ, Sedlak RH, Xie H, Guan J, Nguyen T, Peddu V, Boeckh M, Huang M-L, Cook L, Depledge DP, Zerr DM, Koelle DM, Gantt S, Yoshikawa T, Caserta M, Hill JA, Jerome KR. Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6. BMC Genomics. 2018 Mar 20;19(1):204.
Full-text Article: http://scholars.fhcrc.org/13375/

Hargreaves JR, Krishnaratne S, Mathema H, Lilleston PS, Sievwright K, Mandla N, Mainga T, Vermaak R, Piwowar-Manning E, Schaap A, Donnell D, Ayles H, Hayes RJ, Hoddinott G, Bond V, Stangl A. Individual and community-level risk factors for HIV stigma in 21 Zambian and South African communities: analysis of data from the HPTN071 (PopART) study. AIDS. 2018 Mar 27;32(6):783-793.
Full-text Article: http://scholars.fhcrc.org/13437/

Hill JA, Mayer BT, Xie H, Leisenring WM, Boeckh M, Schiffer JT. Reply to Gimenez et al. Clin Infect Dis. 2018 Mar 29.
Full-text Article: http://scholars.fhcrc.org/13424/

Kisalu NK, Idris AH, Weidle C, Flores-Garcia Y, Flynn BJ, Sack BK, Murphy S, Scho N A, Freire E, Francica JR, Miller AB, Gregory J, March S, Liao H-X, Haynes BF, Wiehe K, Trama AM, Saunders KO, Gladden MA, Monroe A, Bonsignori M, Kanekiyo M, Wheatley AK, McDermott AB, Farney SK, Chuang G-Y, Zhang B, Kc N, Chakravarty S, Kwong PD, Sinnis P, Bhatia SN, Kappe SHI, Sim BKL, Hoffman SL, Zavala F, Pancera M, Seder RA. A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite. Nat Med. 2018 May;24(4):408-416.
Full-text Article: http://scholars.fhcrc.org/13366/

Lama JR, Brezak A, Dobbins JG, Sanchez H, Cabello R, Rios J, Bain C, Ulrich A, De la Grecca R, Sanchez J, Duerr A. Design Strategy of the Sabes Study: Diagnosis and Treatment of Early HIV Infection Among Men Who Have Sex With Men and Transgender Women in Lima, Peru, 2013-2017. Am J Epidemiol. 2018 Mar 7.
Full-text Article: http://scholars.fhcrc.org/13317/

Pergam SA, Woodfield MC, Lee CM, Fann JR. Reply to The pot dealer state harms patients with cancer. Cancer. 2018 Mar 30.
Full-text Article: http://scholars.fhcrc.org/13412/

Rao D, Kemp CG, Huh D, Nevin PE, Turan J, Cohn SE, Simoni JM, Andrasik M, Molina Y, Mugavero MJ, French AL. Stigma Reduction Among African American Women with HIV: UNITY Health Study. J Acquir Immune Defic Syndr. 2018 Mar 8.
Full-text Article: http://scholars.fhcrc.org/13327/

Shava E, Lipira LE, Beauchamp GG, Donnell DJ, Lockman S, Ruan Y, Shao Y. Risky Sexual Behavior among Individuals receiving Buprenorphine/Naloxone Opiate Dependency Treatment: HIV Prevention Trials Network (HPTN) 058. J Acquir Immune Defic Syndr. 2018 Mar 19.
Full-text Article: http://scholars.fhcrc.org/13372/

Sucharitakul K, Boily M-C, Dimitrov D, Mitchell KM. Influence of model assumptions about HIV disease progression after initiating or stopping treatment on estimates of infections and deaths averted by scaling up antiretroviral therapy. PLoS One. 2018 Mar 19;13(3):e0194220.
Full-text Article: http://scholars.fhcrc.org/13367/

Voillet V, Buggert M, Slichter CK, Berkson JD, Mair F, Addison MM, Dori Y, Nadolski G, Itkin MG, Gottardo R, Betts MR, Prlic M. Human MAIT cells exit peripheral tissues and recirculate via lymph in steady state conditions. JCI Insight. 2018 Apr 5;3(7).
Full-text Article: http://scholars.fhcrc.org/13432/

Wang J, Hilchey SP, DeDiego M, Perry S, Hyrien O, Nogales A, Garigen J, Amanat F, Huertas N, Krammer F, Martinez-Sobrido L, Topham DJ, Treanor JJ, Sangster MY, Zand MS. Broad cross-reactive IgG responses elicited by adjuvanted vaccination with recombinant influenza hemagglutinin (rHA) in ferrets and mice. PLoS One. 2018 Apr 11;13(4):e0193680.
Full-text Article: http://scholars.fhcrc.org/13439/

Wilson KS, Wanje G, Masese L, Simoni J, Shafi J, Adala L, Overbaugh J, Jaoko W, Richardson BA, McClelland RS. A prospective cohort study of fertility desire, unprotected sex, and detectable viral load in HIV-positive female sex workers in Mombasa, Kenya. J Acquir Immune Defic Syndr. 2018 Mar 13.
Full-text Article: http://scholars.fhcrc.org/13314/

Xue KS, Moncla LH, Bedford T, Bloom JD. Within-Host Evolution of Human Influenza Virus. Trends Microbiol. 2018 Mar 10.
Full-text Article: http://scholars.fhcrc.org/13338/

March

Auclair S, Liu F, Niu Q, Hou W, Churchyard G, Morgan C, Frahm N, Nitayaphan S, Pitisuthithum P, Rerks-Ngarm S, Kimata JT, Soong L, Franchini G, Robb M, Kim J, Michael N, Hu H. Distinct susceptibility of HIV vaccine vector-induced CD4 T cells to HIV infection. PLoS Pathog. 2018 Feb 23;14(2):e1006888.
Full-text Article: http://scholars.fhcrc.org/13265/

Balkus JE, Manhart LE, Jensen JS, Anzala O, Kimani J, Schwebke J, Shafi J, Rivers C, Kabare E, McClelland RS. Mycoplasma genitalium infection in Kenyan and US women. Sex Transm Dis. 2018 Jan 26.
Full-text Article: http://scholars.fhcrc.org/13211/

Citronberg JS, Curtis KR, White E, Newcomb PA, Newton K, Atkinson C, Song X, Lampe JW, Hullar MA. Association of gut microbial communities with plasma lipopolysaccharide-binding protein (LBP) in premenopausal women. ISME J. 2018 Feb 12.
Full-text Article: http://scholars.fhcrc.org/13176/

Dombrowski JC, Hughes JP, Buskin SE, Bennett A, Katz D, Fleming M, Nunez A, Golden MR. A Cluster Randomized Evaluation of a Health Department Data to Care Intervention Designed to Increase Engagement in HIV Care and Antiretroviral Use. Sex Transm Dis. 2017 Nov 16.
Full-text Article: http://scholars.fhcrc.org/13209/

Fong Y, Halloran ME, Park JK, Marks F, Clemens JD, Chao DL. Efficacy of a bivalent killed whole-cell cholera vaccine over five years: a re-analysis of a cluster-randomized trial. BMC Infect Dis. 2018 Feb 20;18(1):84.
Full-text Article: http://scholars.fhcrc.org/13231/

Greninger AL, Roychoudhury P, Makhsous N, Hanson D, Chase J, Krueger G, Xie H, Huang M-L, Saunders L, Ablashi D, Koelle DM, Cook L, Jerome KR. Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains. J Virol. 2018 Feb 28.
Full-text Article: http://scholars.fhcrc.org/13258/

Jordahl KM, Randolph TW, Song X, Sather CL, Tinker LF, Phipps AI, Kelsey KT, White E, Bhatti P. Genome-wide DNA methylation in pre-diagnostic blood and bladder cancer risk in the Women's Health Initiative. Cancer Epidemiol Biomarkers Prev. 2018 Mar 14.
Full-text Article: http://scholars.fhcrc.org/13308/

Kang C, Janes H, Tajik P, Groen H, Mol B, Koopmans C, Broekhuijsen K, Zwertbroek E, van Pampus M, Franssen M. Evaluation of biomarkers for treatment selection using individual participant data from multiple clinical trials. Stat Med. 2018 Feb 14.
Full-text Article: http://scholars.fhcrc.org/13164/

Katz J, Englund JA, Steinhoff MC, Khatry SK, Shrestha L, Kuypers J, Mullany LC, Chu HY, LeClerq SC, Kozuki N, Tielsch JM. Impact of timing of influenza vaccination in pregnancy on transplacental antibody transfer, influenza incidence and birth outcomes; a randomized trial in rural Nepal. Clin Infect Dis. 2018 Feb 14.
Full-text Article: http://scholars.fhcrc.org/13220/

Khosropour CM, Bell TR, Hughes JP, Manhart LE, Golden MR. A population-based study to compare treatment outcomes among women with urogenital chlamydial infection in Washington State, 1992-2015. Sex Transm Dis. 2017 Nov 16.
Full-text Article: http://scholars.fhcrc.org/13210/

Kilburn KN, Pettifor A, Edwards JK, Selin A, Twine R, MacPhail C, Wagner R, Hughes JP, Wang J, Kahn K. Conditional cash transfers and the reduction in partner violence for young women: an investigation of causal pathways using evidence from a randomized experiment in South Africa (HPTN 068). J Int AIDS Soc. 2018 Feb;21 Suppl 1.
Full-text Article: http://scholars.fhcrc.org/13247/

Kiyaga C, Urick B, Fong Y, Okiira C, Nabukeera-Barungi N, Nansera D, Ochola E, Nteziyaremye J, Bigira V, Ssewanyana I, Olupot-Olupot P, Peter T, Ghadrshenas A, Vojnov L. Where have all the children gone? High HIV prevalence in infants attending nutrition and inpatient entry points. J Int AIDS Soc. 2018 Feb;21(2).
Full-text Article: http://scholars.fhcrc.org/13274/

Kleinstein SE, Shea PR, Allen AS, Koelle DM, Wald A, Goldstein DB. Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2). Genes Immun. 2018 Feb 28.
Full-text Article: http://scholars.fhcrc.org/13309/

Laeyendecker O, Konikoff J, Morrison DE, Brookmeyer R, Wang J, Celum C, Morrison CS, Abdool Karim Q, Pettifor AE, Eshleman SH. Identification and validation of a multi-assay algorithm for cross-sectional HIV incidence estimation in populations with subtype C infection. J Int AIDS Soc. 2018 Feb;21(2).
Full-text Article: http://scholars.fhcrc.org/13251/

Lannon SMR, Adams Waldorf KM, Fiedler T, Kapur RP, Agnew K, Rajagopal L, Gravett MG, Fredricks DN. Parallel detection of lactobacillus and bacterial vaginosis-associated bacterial DNA in the chorioamnion and vagina of pregnant women at term. J Matern Fetal Neonatal Med. 2018 Mar 12:1-9.
Full-text Article: http://scholars.fhcrc.org/13272/

Mitchell KM, Dimitrov D, Hughes JP, Xia F, Donnell D, Amico KR, Bokoch K, Chitwarakorn A, Bekker L-G, Holtz TH, Mannheimer S, Grant RM, Boily M-C. In what circumstances could nondaily preexposure prophylaxis for HIV substantially reduce program costs? AIDS. 2018 Mar 27;32(6):809-818.
Full-text Article: http://scholars.fhcrc.org/13191/

Mwenda R, Fong Y, Magombo T, Saka E, Midian D, Mwase C, Kandulu J, Wang M, Thomas R, Sherman J, Vojnov L. Significant Patient Impact Observed Upon Implementation of Point-Of-Care Early Infant Diagnosis Technologies in an Observational Study in Malawi. Clin Infect Dis. 2018 Feb 27.
Full-text Article: http://scholars.fhcrc.org/13249/

Ogimi C, Englund JA, Bradford MC, Qin X, Boeckh M, Waghmare A. Characteristics and Outcomes of Coronavirus Infection in Children: The Role of Viral Factors and an Immunocompromised State. J Pediatric Infect Dis Soc. 2018 Feb 13.
Full-text Article: http://scholars.fhcrc.org/13163/

Pavia-Ruz N, Diana Patricia R, Salja V, Granja P, Balam-May A, Longini IM, Halloran ME, Manrique P, Gomez-Dantes H. Seroprevalence of Dengue Antibodies in Three Urban Settings in Yucatan, Mexico. Am J Trop Med Hyg. 2018 Feb 19.
Full-text Article: http://scholars.fhcrc.org/13229/

Rao D, Andrasik MP, Lipira L. HIV Stigma Among Black Women in the United States: Intersectionality, Support, Resilience. Am J Public Health. 2018 Apr;108(4):446-448.
Full-text Article: http://scholars.fhcrc.org/13284/

Reeves DB, Magaret AS, Greninger AL, Johnston C, Schiffer JT. Model-based estimation of superinfection prevalence from limited datasets. J R Soc Interface. 2018 Feb;15(139).
Full-text Article: http://scholars.fhcrc.org/13248/

Savage TJ, Kuypers J, Chu HY, Bradford MC, Buccat AM, Qin X, Klein EJ, Jerome KR, Englund JA, Waghmare A. Enterovirus D-68 in Children Presenting for Acute Care in the Hospital Setting. Influenza Other Respir Viruses. 2018 Mar 2.
Full-text Article: http://scholars.fhcrc.org/13290/

Sun Y, Qi L, Yang G, Gilbert PB. Hypothesis tests for stratified mark-specific proportional hazards models with missing covariates, with application to HIV vaccine efficacy trials. Biom J. 2018 Feb 28.
Full-text Article: http://scholars.fhcrc.org/13250/

Thomson KA, Hughes J, Baeten JM, John-Stewart G, Celum C, Cohen CR, Ngure K, Kiarie J, Mugo N, Heffron R. Increased Risk of Female HIV-1 Acquisition Throughout Pregnancy and Postpartum: A Prospective Per-coital Act Analysis Among Women with HIV-1 Infected Partners. J Infect Dis. 2018 Mar 5.
Full-text Article: http://scholars.fhcrc.org/13282/

Vermandere M, Aertgeerts B, Agoritsas T, Liu C, Burgers J, Merglen A, Okwen PM, Lytvyn L, Chua S, Vandvik PO, Guyatt GH, Beltran-Arroyave C, Lavergne V, Speeckaert R, Steen FE, Arteaga V, Sender R, McLeod S, Sun X, Wang W, Siemieniuk RAC. Antibiotics after incision and drainage for uncomplicated skin abscesses: a clinical practice guideline. BMJ. 2018 Feb 6;360:k243.
Full-text Article: http://scholars.fhcrc.org/13171/ 

February

Balasubramanian P, Williams C, Shapiro MB, Sinangil F, Higgins K, Nadas A, Totrov M, Kong X-P, Fiore-Gartland AJ, Haigwood NL, Zolla-Pazner S, Hioe CE. Functional Antibody Response Against V1V2 and V3 of HIV gp120 in the VAX003 and VAX004 Vaccine Trials. Sci Rep. 2018 Jan 11;8(1):542.
Full-text Article: http://scholars.fhcrc.org/13067/

Coghill AE, Schenk JM, Mahkoul Z, Orem J, Phipps W, Casper C. Omega-3 decreases IL-6 levels in HIV and human herpesvirus-8 coinfected patients in Uganda. AIDS. 2018 Feb 20;32(4):505-512.
Full-text Article: http://scholars.fhcrc.org/13120/

Collett BR, Leroux BG, Wallace ER, Gallagher E, Shao J, Speltz ML. Head shape at age 36 months among children with and without a history of positional skull deformation. J Neurosurg Pediatr. 2018 Mar;21(3):204-213.
Full-text Article: http://scholars.fhcrc.org/13030/

Dudas G, Carvalho LM, Rambaut A, Bedford T. MERS-CoV spillover at the camel-human interface. Elife. 2018 Jan 16;7. pii: e31257
Full-text Article: http://scholars.fhcrc.org/13051/

Feldstein LR, Rowhani-Rahbar A, Staples JE, Halloran ME, Ellis EM. An Assessment of Household and Individual-Level Mosquito Prevention Methods during the Chikungunya Virus Outbreak in the United States Virgin Islands, 2014-2015. Am J Trop Med Hyg. 2018 Feb 5. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13155/

Fong Y, Shen X, Ashley VC, Deal A, Seaton KE, Yu C, Grant SP, Ferrari G, deCamp AC, Bailer RT, Koup RA, Montefiori D, Haynes BF, Sarzotti-Kelsoe M, Graham BS, Carpp LN, Hammer SM, Sobieszczyk M, Karuna S, Swann E, DeJesus E, Mulligan M, Frank I, Buchbinder S, Novak RM, McElrath MJ, Kalams S, Keefer M, Frahm NA, Janes HE, Gilbert PB, Tomaras GD. Vaccine-induced antibody responses modify the association between T-cell immune responses and HIV-1 infection risk in HVTN 505. J Infect Dis. 2018 Jan 8. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13066/

Goyette MS, Mutiti PM, Bukusi D, Mmed, Wamuti BM, Otieno FA, Cherutich P, Golden MR, Spiegel H, Richardson BA, Ng'ang'a A, Farquhar C. Hiv Assisted Partner Services Among Those with and Without A History of Intimate Partner Violence in Kenya. J Acquir Immune Defic Syndr. 2018 Feb 5. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13157/

Grant RM, Mannheimer S, Hughes JP, Hirsch-Moverman Y, Loquere A, Chitwarakorn A, Curlin ME, Li M, Amico KR, Hendrix CW, Anderson PL, Dye BJ, Marzinke MA, Piwowar-Manning E, McKinstry L, Elharrar V, Stirratt M, Rooney JF, Eshleman SH, McNicholl JM, van Griensven F, Holtz TH. Daily and Nondaily Oral Preexposure Prophylaxis in Men and Transgender Women Who Have Sex With Men: The Human Immunodeficiency Virus Prevention Trials Network 067/ADAPT Study. Clin Infect Dis. 2018 Feb 6. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13136/

Hansen SG, Zak DE, Xu G, Ford JC, Marshall EE, Malouli D, Gilbride RM, Hughes CM, Ventura AB, Ainslie E, Randall KT, Selseth AN, Rundstrom P, Herlache L, Lewis MS, Park H, Planer SL, Turner JM, Fischer M, Armstrong C, Zweig RC, Valvo J, Braun JM, Shankar S, Lu L, Sylwester AW, Legasse AW, Messerle M, Jarvis MA, Amon LM, Aderem A, Alter G, Laddy DJ, Stone M, Bonavia A, Evans TG, Axthelm MK, Fruh K, Edlefsen PT, Picker LJ. Prevention of tuberculosis in rhesus macaques by a cytomegalovirus-based vaccine. Nat Med. 2018 Feb;24(2):130-143.
Full-text Article: http://scholars.fhcrc.org/13054/

Heffron R, Ngure K, Odoyo J, Bulya N, Tindimwebwa E, Hong T, Kidoguchi L, Donnell D, Mugo NR, Bukusi EA, Katabira E, Asiimwe S, Morton J, Morrison S, Haugen H, Mujugira A, Haberer JE, Ware NC, Wyatt MA, Marzinke MA, Frenkel LM, Celum C, Baeten JM. Pre-exposure prophylaxis for HIV-negative persons with partners living with HIV: uptake, use, and effectiveness in an open-label demonstration project in East Africa. Gates Open Res. 2017 Nov 6;1:3.
Full-text Article: http://scholars.fhcrc.org/13096/

Hill MJ, Holt M, Hanscom B, Wang Z, Cardenas-Turanzas M, Latkin C. Gender and race as correlates of high risk sex behaviors among injection drug users at risk for HIV enrolled in the HPTN 037 study. Drug Alcohol Depend. 2018 Feb 1;183:267-274.
Full-text Article: http://scholars.fhcrc.org/13019/

Hofmeyr GJ, Morrison CS, Baeten JM, Chipato T, Donnell D, Gichangi P, Mugo N, Nanda K, Rees H, Steyn P, Taylor D. Rationale and design of a multi-center, open-label, randomised clinical trial comparing HIV incidence and contraceptive benefits in women using three commonly-used contraceptive methods (the ECHO study). Gates Open Res. 2017 Dec 29;1:17.
Full-text Article: http://scholars.fhcrc.org/13097/

Lee B, Dickson DM, deCamp AC, Colgate ER, Diehl SA, Uddin MI, Sharmin S, Islam S, Bhuiyan TR, Alam M, Nayak U, Mychaleckyj JC, Taniuchi M, Petri WA, Jr., Haque R, Qadri F, Kirkpatrick BD. Histoblood Group Antigen Phenotype Determines Susceptibility to Genotype-specific Rotavirus Infections and Impacts Measures of Rotavirus Vaccine Efficacy. J Infect Dis. 2018 Jan 30. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13123/

Lemos MP, Taylor TE, McGoldrick SM, Molyneux ME, Menon M, Kussick S, Mkhize NN, Martinson NA, Stritmatter A, Randolph-Habecker J. Pathology-Based Research in Africa. Clin Lab Med. 2018 Mar;38(1):67-90.
Full-text Article: http://scholars.fhcrc.org/13160/

Liu G, Sharma M, Tan N, Barnabas R. HIV-positive women have higher risk of HPV infection, precancerous lesions, and cervical cancer: a systematic review and meta-analysis. AIDS. 2018 Jan 24. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13081/

Mair F, Prlic M. OMIP-044: 28-color immunophenotyping of the human dendritic cell compartment. Cytometry A. 2018 Jan 22. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13094/

McClelland RS, Lingappa JR, Srinivasan S, Kinuthia J, John-Stewart GC, Jaoko W, Richardson BA, Yuhas K, Fiedler TL, Mandaliya KN, Munch MM, Mugo NR, Cohen CR, Baeten JM, Celum C, Overbaugh J, Fredricks DN. Evaluation of the association between the concentrations of key vaginal bacteria and the increased risk of HIV acquisition in African women from five cohorts: a nested case-control study. Lancet Infect Dis. 2018 Jan 25. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13148/

Means AR, van Lieshout L, Brienen E, Yuhas K, Hughes JP, Ndungu P, Singa B, Walson JL. Combined effectiveness of anthelmintic chemotherapy and WASH among HIV-infected adults. PLoS Negl Trop Dis. 2018 Jan 18;12(1):e0005955.
Full-text Article: http://scholars.fhcrc.org/13040/

Menon M, Coghill A, Mutyaba I, Okuku F, Phipps W, Harlan J, Orem J, Casper C. Whom to treat? Factors associated with chemotherapy recommendations and outcomes among patients with NHL at the Uganda Cancer Institute. PLoS One. 2018 Feb 1;13(2):e0191967.
Full-text Article: http://scholars.fhcrc.org/13124/

Obayo S, Lukwago L, Orem J, Faulx AL, Probert CS. Gastrointestinal malignancies at five regional referral hospitals in Uganda. Afr Health Sci. 2017;17(4):1051-1058.
Full-text Article: http://scholars.fhcrc.org/13131/
PubMed Record: N/A

Randolph-Habecker J, Stritmatter A, Cherepow L, Basemara D, Alexandre MW, Gordon-Maclean C, Casper C. Opening a histopathology laboratory in Kampala Uganda - from the ground up. Journal of Histotechnology. 2017;40(4):121-129.
Full-text Article: http://scholars.fhcrc.org/13162/
PubMed Record: N/A

Rosenberg M, Pettifor A, Twine R, Hughes JP, Gomez-Olive FX, Wagner RG, Sulaimon A, Tollman S, Selin A, MacPhail C, Kahn K. Evidence for sample selection effect and Hawthorne effect in behavioural HIV prevention trial among young women in a rural South African community. BMJ Open. 2018;8(1):e019167.
Full-text Article: http://scholars.fhcrc.org/13064/

Shapiro AE, van Heerden A, Schaafsma TT, Hughes JP, Baeten JM, van Rooyen H, Tumwesigye E, Celum CL, Barnabas RV. Completion of the tuberculosis care cascade in a community-based HIV linkage-to-care study in South Africa and Uganda. J Int AIDS Soc. 2018 Jan;21(1).
Full-text Article: http://scholars.fhcrc.org/13119/

Stankiewicz Karita HC, Moss NJ, Laschansky E, Drolette L, Magaret AS, Selke S, Gardella C, Wald A. Invasive Obstetric Procedures and Cesarean Sections in Women With Known Herpes Simplex Virus Status During Pregnancy. Open Forum Infect Dis. 2017 Nov 6;4(4):ofx248
Full-text Article: http://scholars.fhcrc.org/13025/

Thiam-Diouf A, Metch B, Sharpe C, Mulugeta R, Andrasik MP. Substance use patterns of HVTN phase I clinical trial participants: Enrollment, risk reduction counseling and retention. Vaccine. 2018 Feb 21;36(9):1235-1242.
Full-text Article: http://scholars.fhcrc.org/13147/

Trang TP, Whalen M, Hilts-Horeczko A, Doernberg SB, Liu C. Comparative effectiveness of aerosolized versus oral ribavirin for the treatment of respiratory syncytial virus infections: A single-center retrospective cohort study and review of the literature. Transpl Infect Dis. 2018 Jan 23. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13089/

Uldrick TS. Reply to M. Janakiram et al. J Clin Oncol. 2018 Jan 30. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13122/

Yates NL, deCamp AC, Korber BT, Liao H-X, Irene C, Pinter A, Peacock J, Harris LJ, Sawant S, Hraber P, Shen X, Rerks-Ngarm S, Pitisuttithum P, Nitayapan S, Berman PW, Robb ML, Pantaleo G, Zolla-Pazner S, Haynes BF, Alam SM, Montefiori DC, Tomaras GD. HIV-1 Envelope Glycoproteins from Diverse Clades Differentiate Antibody Responses and Durability among Vaccinees. J Virol. 2018 Jan 31. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/13125/ 

January

Aravantinou M, Mizenina O, Calenda G, Kenney J, Frank I, Lifson JD, Szpara M, Jing L, Koelle DM, Teleshova N, Grasperge B, Blanchard J, Gettie A, Martinelli E, Derby N. Experimental Oral Herpes Simplex Virus-1 (HSV-1) Co-infection in Simian Immunodeficiency Virus (SIV)-Infected Rhesus Macaques. Front Microbiol. 2017 Dec 5;8:2342.
Full-text Article: http://scholars.fhcrc.org/12915/

Avnir Y, Prachanronarong KL, Zhang Z, Hou S, Peterson EC, Sui J, Zayed H, Kurella VB, McGuire AT, Stamatatos L, Hilbert BJ, Bohn M-F, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Goodall M, Jefferis R, Zhu Q, Kurt Yilmaz N, Schiffer CA, Marasco WA. Structural Determination of the Broadly Reactive Anti-IGHV1-69 Anti-idiotypic Antibody G6 and Its Idiotope. Cell Rep. 2017 Dec 12;21(11):3243-3255.
Full-text Article: http://scholars.fhcrc.org/12974/

Benkeser D, Carone M, van der Laan MJ, Gilbert PB. Doubly robust nonparametric inference on the average treatment effect. Biometrika. 2017. 104(4), 863-880.
Full-text Article: http://scholars.fhcrc.org/13015/
PubMed Record: N/A

Cao S, Jiang Y, Levy CN, Hughes SM, Zhang H, Hladik F, Woodrow KA. Optimization and comparison of CD4-targeting lipid-polymer hybrid nanoparticles using different binding ligands. J Biomed Mater Res A. 2017 Dec 22.
Full-text Article: http://scholars.fhcrc.org/12960/

Francica JR, Zak DE, Linde C, Siena E, Johnson C, Juraska M, Yates NL, Gunn B, De Gregorio E, Flynn BJ, Valiante NM, Malyala P, Barnett SW, Sarkar P, Singh M, Jain S, Ackerman M, Alam M, Ferrari G, Tomaras GD, O'Hagan DT, Aderem A, Alter G, Seder RA. Innate transcriptional effects by adjuvants on the magnitude, quality, and durability of HIV envelope responses in NHPs. Blood Adv. 2017 Nov 17;1(25):2329-2342.
Full-text Article: http://scholars.fhcrc.org/12989/

Gilbert PB, Juraska M, deCamp AC, Karuna S, Edupuganti S, Mgodi N, Donnell DJ, Bentley C, Sista N, Andrew P, Isaacs A, Huang Y, Zhang L, Capparelli E, Kochar N, Wang J, Eshleman SH, Mayer KH, Magaret CA, Hural J, Kublin JG, Gray G, Montefiori DC, Gomez MM, Burns DN, McElrath J, Ledgerwood J, Graham BS, Mascola JR, Cohen M, Corey L. Basis and Statistical Design of the Passive HIV-1 Antibody Mediated Prevention (AMP) Test-of-Concept Efficacy Trials. Stat Commun Infect Dis. 2017 Jan;9(1).
Full-text Article: http://scholars.fhcrc.org/12892/

Graham JB, Swarts JL, Lund JM. A Mouse Model of West Nile Virus Infection. Curr Protoc Mouse Biol. 2017 Dec 20;7(4):221-235.
Full-text Article: http://scholars.fhcrc.org/12913/

Greene SA, McGrath CJ, Lehman DA, Marson KG, Trinh TT, Yatich N, Nyongesa-Malava E, Kiptinness C, Richardson BA, John-Stewart GC, De Vuyst H, Sakr SR, Mugo NR, Chung MH. Increased Cervical HIV RNA Shedding Among HIV-Infected Women Randomized to Loop Electrosurgical Excision Procedure (LEEP) compared to Cryotherapy for Cervical Intraepithelial Neoplasia 2/3. Clin Infect Dis. 2017 Dec 20.
Full-text Article: http://scholars.fhcrc.org/12958/

Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela J-P, Ozler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M. Simulations for designing and interpreting intervention trials in infectious diseases. BMC Med. 2017 Dec 29;15(1):223.
Full-text Article: http://scholars.fhcrc.org/13012/

Herbeck JT, Peebles K, Edlefsen PT, Rolland M, Murphy JT, Gottlieb GS, Abernethy N, Mullins JI, Mittler JE, Goodreau SM. HIV population-level adaptation can rapidly diminish the impact of a partially effective vaccine. Vaccine. 2018 Jan 25;36(4):514-520.
Full-text Article: http://scholars.fhcrc.org/12972/

Hraber P, Rademeyer C, Williamson C, Seaman MS, Gottardo R, Tang H, Greene K, Gao H, LaBranche C, Mascola JR, Morris L, Montefiori DC, Korber B. Correction for Hraber et al., "Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments". J Virol. 2017 Dec 14;92(1).
Full-text Article: http://scholars.fhcrc.org/12978/

Huang Y, Zhang L, Jolliffe D, Sanchez B, Stjernholm G, Jelmert O, Okvist M, Sommerfelt MA. Post-vaccination C-Reactive Protein (CRP) and C5/gp41732-744 Antibody Level Fold-changes Over Baseline Are Independent Predictors of Therapeutic HIV Vaccine Effect in a Phase 2 Clinical Study of Vacc-4x. AIDS Res Hum Retroviruses. 2018 Jan 3.
Full-text Article: http://scholars.fhcrc.org/12986/

Johnston C, Magaret A, Roychoudhury P, Greninger AL, Reeves D, Schiffer J, Jerome KR, Sather C, Diem K, Lingappa JR, Celum C, Koelle DM, Wald A. Dual-strain genital herpes simplex virus type 2 (HSV-2) infection in the US, Peru, and 8 countries in sub-Saharan Africa: A nested cross-sectional viral genotyping study. PLoS Med. 2017 Dec 27;14(12):e1002475.
Full-text Article: http://scholars.fhcrc.org/12955/

Komaroff AL, Boeckh M, Eliason E, Phan T, Kaufer BB. Summary of the 10(th) International Conference on Human Herpesviruses 6 and 7 (HHV-6A, -6B and HHV-7). J Med Virol. 2017 Dec 20.
Full-text Article: http://scholars.fhcrc.org/12975/

Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels R, Russell C, Pybus OG, McCauley J, Kellam P, Watson SJ. Genome-wide evolutionary dynamics of influenza B viruses on a global scale. PLoS Pathog. 2017 Dec 28;13(12):e1006749.
Full-text Article: http://scholars.fhcrc.org/12935/

Low D, Merkel EC, Menon M, Lyman GH, Ddungu H, Namukwaya E, Leng M, Casper C. Chemotherapy Use at the End of Life in Uganda. J Glob Oncol. 2017 Dec;3(6):711-719
Full-text Article: http://scholars.fhcrc.org/12928/

Mhlanga FG, Noguchi L, Balkus JE, Kabwigu S, Scheckter R, Piper J, Watts H, O'Rourke C, Torjesen K, Brown ER, Hillier SL, Beigi R. Implementation of a prospective pregnancy registry for antiretroviral based HIV prevention trials. HIV Clin Trials. 2017 Dec 21:1-7.
Full-text Article: http://scholars.fhcrc.org/12969/

Palumbo PJ, Fogel JM, Hudelson SE, Wilson EA, Hart S, Hovind L, Piwowar-Manning E, Wallis C, Papathanasopoulos MA, Morgado MG, Saravanan S, Tripathy S, Eron JJ, Gallant JE, Mph, McCauley M, Gamble T, Hosseinipour MC, Kumarasamy N, Hakim JG, Pilotto JH, Kumwenda J, Akelo V, Godbole SV, Santos BR, Grinsztejn B, Panchia R, Chariyalertsak S, Makhema J, Badal-Faesen S, Chen YQ, Cohen MS, Eshleman SH. Hiv Drug Resistance in Adults Receiving Early Versus Delayed Antiretroviral Therapy: Hptn 052. J Acquir Immune Defic Syndr. 2017 Dec 28.
Full-text Article: http://scholars.fhcrc.org/12998/

Parker M, Han Z, Abu-Haydar E, Matsiko E, Iyakaremye D, Tuyisenge L, Magaret A, Lyambabaje A. An evaluation of hemoglobin measurement tools and their accuracy and reliability when screening for child anemia in Rwanda: A randomized study. PLoS One. 2018 Jan 4;13(1):e0187663.
Full-text Article: http://scholars.fhcrc.org/12981/

Pavlinac PB, Singa BO, John-Stewart GC, Richardson BA, Brander RL, McGrath CJ, Tickell KD, Amondi M, Rwigi D, Babigumira JB, Kariuki S, Nduati R, Walson JL. Azithromycin to prevent post-discharge morbidity and mortality in Kenyan children: a protocol for a randomised, double-blind, placebo-controlled trial (the Toto Bora trial). BMJ Open. 2017 Dec 29;7(12):e019170.
Full-text Article: http://scholars.fhcrc.org/13004/

Ross JM, Ying R, Celum CL, Baeten JM, Thomas KK, Murnane PM, van Rooyen H, Hughes JP, Barnabas RV. Modeling HIV disease progression and transmission at population-level: The potential impact of modifying disease progression in HIV treatment programs. Epidemics. 2017 Dec 5.
Full-text Article: http://scholars.fhcrc.org/12889/

Schenk JM, Song X, Morrissey C, Vessella RL, Lin DW, Neuhouser ML. Plasma Fatty Acids as Surrogate for Prostate Levels. Nutr Cancer. 2018 Jan;70(1):45-50.
Full-text Article: http://scholars.fhcrc.org/12906/

Seaton KE, Vandergrift NA, Deal AW, Rountree W, Bainbridge J, Grebe E, Anderson DA, Sawant S, Shen X, Yates NL, Denny TN, Liao H-X, Haynes BF, Robb ML, Parkin N, Santos BR, Garrett N, Price MA, Naniche D, Duerr AC, Keating S, Hampton D, Facente S, Marson K, Welte A, Pilcher CD, Cohen MS, Tomaras GD. Computational analysis of antibody dynamics identifies recent HIV-1 infection. JCI Insight. 2017 Dec 21;2(24).
Full-text Article: http://scholars.fhcrc.org/12911/

Seo S, Yu J, Jenkins IC, Leisenring WM, Steven-Ayers T, Kuypers JM, Huang M-L, Jerome KR, Boeckh M, Paczesny S. Diagnostic and Prognostic Plasma Biomarkers for Idiopathic Pneumonia Syndrome after Hematopoietic Cell Transplantation. Biol Blood Marrow Transplant. 2017 Dec 6.
Full-text Article: http://scholars.fhcrc.org/12890/

Sivagnanam S, Sengupta DJ, Hoogestraat D, Jain R, Stednick Z, Fredricks DN, Hendrie P, Whimbey E, Podczervinski ST, Krantz EM, Duchin JS, Pergam SA. Seasonal clustering of sinopulmonary mucormycosis in patients with hematologic malignancies at a large comprehensive cancer center. Antimicrob Resist Infect Control. 2017 Dec 6;6:123.
Full-text Article: http://scholars.fhcrc.org/12883/

Wilson KS, Mugo C, Bukusi D, Inwani I, Wagner AD, Moraa H, Owens T, Babigumira JB, Richardson BA, John-Stewart GC, Slyker JA, Wamalwa DC, Kohler PK. Simulated patient encounters to improve adolescent retention in HIV care in Kenya: study protocol of a stepped-wedge randomized controlled trial. Trials. 2017 Dec 28;18(1):619.
Full-text Article: http://scholars.fhcrc.org/12941/

Yoo W, Gjuka D, Stevenson HL, Song X, Shen H, Yoo SY, Wang J, Fallon M, Ioannou GN, Harrison SA, Beretta L. Fatty acids in non-alcoholic steatohepatitis: Focus on pentadecanoic acid. PLoS One. 2017 Dec 15;12(12):e0189965.
Full-text Article: http://scholars.fhcrc.org/12929/

 


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