Vaccine and Infectious Disease Division

Recent Publications

Print outs of scientific publications

2016

July

Arndt MB, Richardson BA, Ahmed T, Mahfuz M, Haque R, John-Stewart GC, Denno DM, Petri WA, Jr., Kosek M, Walson JL. Fecal Markers of Environmental Enteropathy and Subsequent Growth in Bangladeshi Children. Am J Trop Med Hyg. 2016 Jun 27.
Full-text Article: http://scholars.fhcrc.org/9962/

Ballen K, Ahn KW, Chen M, Abdel-Azim H, Ahmed I, Aljurf M, Antin J, Bhatt AS, Boeckh M, Chen G, Dandoy C, George B, Laughlin MJ, Lazarus HM, MacMillan ML, Margolis DA, Marks DI, Norkin M, Rosenthal J, Saad A, Savani B, Schouten HC, Storek J, Szabolcs P, Ustun C, Verneris MR, Waller EK, Weisdorf DJ, Williams KM, Wingard JR, Wirk B, Wolfs T, Young JH, Auletta J, Komanduri KV, Lindemans C, Riches ML. Infection Rates among Acute Leukemia Patients Receiving Alternative Donor Hematopoietic Cell Transplantation. Biol Blood Marrow Transplant. 2016 Jun 22. pii: S1083-8791(16)30147-1.
Full-text Article: http://scholars.fhcrc.org/9959/

Feldstein LR, Matrajt L, Halloran ME, Keitel WA, Longini IM, Jr. Extrapolating theoretical efficacy of inactivated influenza A/H5N1 virus vaccine from human immunogenicity studies. Vaccine. 2016 Jul 19;34(33):3796-802.
Full-text Article: http://scholars.fhcrc.org/9885/

Fisher L, Wakefield J, Bauer C, Self S. Time series modeling of pathogen-specific disease probabilities with subsampled data. Biometrics. 2016 Jul 5.
Full-text Article: http://scholars.fhcrc.org/9994/

Godfrey C, Tauscher G, Hunsberger S, Austin M, Scott L, Schouten JT, Luetkemeyer AF, Benson C, Coombs R, Swindells S. A survey of tuberculosis infection control practices at the NIH/NIAID/DAIDS-supported clinical trial sites in low and middle income countries. BMC Infect Dis. 2016 Jun 10;16(1):269.
Full-text Article: http://scholars.fhcrc.org/9892/

Inamoto Y, Martin PJ, Flowers ME, Lee SJ, Carpenter PA, Warren EH, Geraghty DE, Lee N, Boeckh MJ, Storer BE, Levine DM, Fan W, Zhao LP, Hansen JA. Genetic risk factors for sclerotic graft-versus-host disease. Blood. 2016 Jun 16.
Full-text Article: http://scholars.fhcrc.org/9944/

Magaret A, Angus DC, Adhikari NK, Banura P, Kissoon N, Lawler JV, Jacob ST. Corrigendum to "Design of a multi-arm randomized clinical trial with no control arm" [Contemporary Clinical Trials 46 (2016) 12-17]. Contemp Clin Trials. 2016 Jun 28. pii: S1551-7144(16)30092-1.
Full-text Article: http://scholars.fhcrc.org/9990/

Rossenkhan R, MacLeod IJ, Brumme ZL, Magaret C, Sebunya TK, Musonda R, Gashe BA, Novitsky V, Edlefsen P, Essex M. Transmitted / founder HIV-1 subtype C viruses show distinctive signature patterns in Vif, Vpr and Vpu that are under subsequent immune pressure during early infection. AIDS Res Hum Retroviruses. 2016 Jun 28.
Full-text Article: http://scholars.fhcrc.org/9975/

Safrit JT, Tomaras GD, Hanke T, deCamp AC, Voronin Y. The Landscape of Targeted Immune Responses in the HIV-1 Vaccine Field. AIDS Res Hum Retroviruses. 2016 Jun 27.
Full-text Article: http://scholars.fhcrc.org/9974/

Scheel JR, Peacock S, Orem J, Bugeza S, Muyinda Z, Porter PL, Wood WC, Comis RL, Lehman CD. Improving Breast Ultrasound Interpretation in Uganda Using a Condensed Breast Imaging Reporting and Data System. Acad Radiol. 2016 Jun 17. pii: S1076-6332(16)30097-6.
Full-text Article: http://scholars.fhcrc.org/9921/

Schiffer JT, Swan DA, Magaret A, Schacker TW, Wald A, Corey L. Mathematical Modeling Predicts that Increased HSV-2 Shedding in HIV-1 Infected Persons Is Due to Poor Immunologic Control in Ganglia and Genital Mucosa. PLoS One. 2016 Jun 10;11(6):e0155124.
Full-text Article: http://scholars.fhcrc.org/9891/

Sharma M, Farquhar C, Ying R, Krakowiak D, Kinuthia J, Osoti A, Asila V, Gone M, Mark J, Barnabas RV. Modeling the Cost-Effectiveness of Home-Based HIV Testing and Education (HOPE) for Pregnant Women and Their Male Partners in Nyanza Province, Kenya. J Acquir Immune Defic Syndr. 2016 Aug 1;72 Suppl 2:S174-80.
Full-text Article: http://scholars.fhcrc.org/9985/

Slichter CK, McDavid A, Miller HW, Finak G, Seymour BJ, McNevin JP, Diaz G, Czartoski JL, McElrath MJ, Gottardo R, Prlic M. Distinct activation thresholds of human conventional and innate-like memory T cells. JCI Insight. 2016 Jun 2;1(8).
Full-text Article: http://scholars.fhcrc.org/9938/

Song X, Schenk JM, Diep P, Murphy RA, Harris TB, Eiriksdottir G, Gudnason V, Casper C, Lampe JW, Neuhouser ML. Measurement of Circulating Phospholipid Fatty Acids Association between Relative Weight Percentage and Absolute Concentrations. J Am Coll Nutr. 2016 Jun 17:1-10.
Full-text Article: http://scholars.fhcrc.org/9918/

Wang X, Dai JY. TwoPhaseInd an R package for estimating gene-treatment interactions and discovering predictive markers in randomized clinical trials. Bioinformatics. 2016 Jul 4.
Full-text Article: http://scholars.fhcrc.org/9995/

June

Adachi K,Klausner JD,Xu J,Ank B,Bristow CC,Morgado MG,Watts DH,Weir F,Persing D,Mofenson LM,Veloso VG,Pilotto JH,Joao E,Gray G,Theron G,Santos B,Fonseca R,Kreitchmann R,Pinto J,Mussi-Pinhata MM,Ceriotto M,Machado DM,Bryson YJ,Grinsztejn B,Bastos FI,Siberry G,Nielsen-Saines K. (2016). Chlamydia trachomatis and Neisseria gonorrhoeae in HIV-infected Pregnant Women and Adverse Infant Outcomes. Pediatr Infect Dis J.
Full-text Article: http://scholars.fhcrc.org/9670/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27164464/?otool=fhcrclib

Asturias EJ,Bandyopadhyay AS,Self S,Rivera L,Saez-Llorens X,Lopez E,Melgar M,Gaensbauer JT,Weldon WC,Oberste MS,Borate BR,Gast C,Clemens R,Orenstein W,G MO,Jimeno J,Clemens SA,Ward J,Ruttimann R. (2016). Humoral and intestinal immunity induced by new schedules of bivalent oral poliovirus vaccine and one or two doses of inactivated poliovirus vaccine in Latin American infants: an open-label randomised controlled trial. Lancet.
Full-text Article: http://scholars.fhcrc.org/9730/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27212429/?otool=fhcrclib

Bryan A,Cook L,Atienza EE,Kuypers J,Cent A,Baird GS,Coombs RW,Jerome KR,Wener MH,Butler-Wu SM. (2016). Bloodborne Viral Pathogen Contamination in the Era of Laboratory Automation. Clin Chem.
Full-text Article: http://scholars.fhcrc.org/9717/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27197676/?otool=fhcrclib

Chemaly RF,Aitken SL,Wolfe CR,Jain R,Boeckh MJ. (2016). Aerosolized ribavirin: the most expensive drug for pneumonia. Transpl Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9733/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27214684/?otool=fhcrclib

Chen L,Cook LS,Tang MC,Porter PL,Hill DA,Wiggins CL,Li CI. (2016). Body mass index and risk of luminal, HER2-overexpressing, and triple negative breast cancer. Breast Cancer Res Treat.
Full-text Article: http://scholars.fhcrc.org/9739/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27220749/?otool=fhcrclib

Chow SK,Atienza EE,Cook L,Prince H,Slev P,Lape-Nixon M,Jerome KR. (2016). Comparison of enzyme immunoassays for detection of antibodies to hepatitis D virus in serum. Clin Vaccine Immunol.
Full-text Article: http://scholars.fhcrc.org/9868/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27280621/?otool=fhcrclib

Chu HY,Katz J,Tielsch J,Khatry SK,Shrestha L,LeClerq SC,Magaret A,Kuypers J,Steinhoff M,Englund JA. (2016). Respiratory syncytial virus infection in infants in rural Nepal. J Infect.
Full-text Article: http://scholars.fhcrc.org/9802/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27241525/?otool=fhcrclib

Colombara DV,Manhart LE,Carter JJ,Hawes SE,Weiss NS,Hughes JP,Qiao YL,Taylor PR,Smith JS,Galloway DA. (2016). Absence of an association of human polyomavirus and papillomavirus infection with lung cancer in China: a nested case-control study. BMC Cancer, 16(1), 342. PMCID: PMC4888628.
Full-text Article: http://scholars.fhcrc.org/9813/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27246610/?otool=fhcrclib

Cosgrove CA,Lacey CJ,Cope AV,Bartolf A,Morris G,Yan C,Baden S,Cole T,Carter D,Brodnicki E,Shen X,Joseph S,DeRosa SC,Peng L,Yu X,Ferrari G,Seaman M,Montefiori DC,Frahm N,Tomaras GD,Stohr W,McCormack S,Shattock RJ. (2016). Comparative Immunogenicity of HIV-1 gp140 Vaccine Delivered by Parenteral, and Mucosal Routes in Female Volunteers; MUCOVAC2, A Randomized Two Centre Study. PLoS One, 11(5), e0152038. PMCID: PMC4861263.
Full-text Article: http://scholars.fhcrc.org/9656/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27159166/?otool=fhcrclib

Hladish TJ,Pearson CA,Chao DL,Rojas DP,Recchia GL,Gomez-Dantes H,Halloran ME,Pulliam JR,Longini IM. (2016). Projected Impact of Dengue Vaccination in Yucatan, Mexico. PLoS Negl Trop Dis, 10(5), e0004661.
Full-text Article: http://scholars.fhcrc.org/9740/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27227883/?otool=fhcrclib

Hughes SM,Shu Z,Levy CN,Ferre AL,Hartig H,Fang C,Lentz G,Fialkow M,Kirby AC,Adams Waldorf KM,Veazey RS,Germann A,von Briesen H,McElrath MJ,Dezzutti CS,Sinclair E,Baker CA,Shacklett BL,Gao D,Hladik F. (2016). Cryopreservation of Human Mucosal Leukocytes. PLoS One, 11(5), e0156293.
Full-text Article: http://scholars.fhcrc.org/9738/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27232996/?otool=fhcrclib

Jennings L,Pettifor A,Hamilton E,Ritchwood TD,Xavier Gomez-Olive F,MacPhail C,Hughes J,Selin A,Kahn K. (2016). Economic Resources and HIV Preventive Behaviors Among School-Enrolled Young Women in Rural South Africa (HPTN 068). AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/9833/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27260180/?otool=fhcrclib

Kasaro MP,Husnik MJ,Chi BH,Reid C,Magure T,Makanani B,Tembo T,Ramjee G,Maslankowski L,Rabe L,Brad Guffey M. (2016). Impact of targeted counseling on reported vaginal hygiene practices and bacterial vaginosis: the HIV Prevention Trials Network 035 study. Int J STD AIDS.
Full-text Article: http://scholars.fhcrc.org/9841/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27277555/?otool=fhcrclib

Kasaro MP,Husnik MJ,Chi BH,Reid C,Magure T,Makanani B,Tembo T,Ramjee G,Maslankowski L,Rabe L,Brad Guffey M. (2016). Impact of targeted counseling on reported vaginal hygiene practices and bacterial vaginosis: the HIV Prevention Trials Network 035 study. Int J STD AIDS.
Full-text Article: http://scholars.fhcrc.org/9841/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27277555/?otool=fhcrclib

Kerr KF,Brown MD,Zhu K,Janes H. (2016). Assessing the Clinical Impact of Risk Prediction Models With Decision Curves: Guidance for Correct Interpretation and Appropriate Use. J Clin Oncol.
Full-text Article: http://scholars.fhcrc.org/9796/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27247223/?otool=fhcrclib

McDavid A,Finak G,Gottardo R. (2016). The contribution of cell cycle to heterogeneity in single-cell RNA-seq data. Nat Biotechnol, 34(6), 591-593.
Full-text Article: http://scholars.fhcrc.org/9871/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27281413/?otool=fhcrclib

Noecker C,Eng A,Srinivasan S,Theriot CM,Young VB,Jansson JK,Fredricks DN,Borenstein E. (2016). Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. mSystems, 1(1). PMCID: PMC4883586.
Full-text Article: http://scholars.fhcrc.org/9784/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27239563/?otool=fhcrclib

Ramani S,Mamani N,Villena R,Bandyopadhyay AS,Gast C,Sato A,Laucirica D,Clemens R,Estes MK,O'Ryan ML. (2016). Rotavirus Serum IgA Immune Response in Children Receiving Rotarix(R) Co-Administered with bOPV or IPV. Pediatr Infect Dis J.
Full-text Article: http://scholars.fhcrc.org/9818/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27254033/?otool=fhcrclib

Roberts ST,Khanna AS,Barnabas RV,Goodreau SM,Baeten JM,Celum C,Cassels S. (2016). Estimating the impact of universal antiretroviral therapy for HIV serodiscordant couples through home HIV testing: insights from mathematical models. J Int AIDS Soc, 19(1), 20864. PMCID: PMC4865806.
Full-text Article: http://scholars.fhcrc.org/9684/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27174911/?otool=fhcrclib

Schoofs T,Klein F,Braunschweig M,Kreider EF,Feldmann A,Nogueira L,Oliveira T,Lorenzi JC,Parrish EH,Learn GH,West AP, Jr.,Bjorkman PJ,Schlesinger SJ,Seaman MS,Czartoski J,McElrath MJ,Pfeifer N,Hahn BH,Caskey M,Nussenzweig MC. (2016). HIV-1 therapy with monoclonal antibody 3BNC117 elicits host immune responses against HIV-1. Science, 352(6288), 997-1001.
Full-text Article: http://scholars.fhcrc.org/9709/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27199429/?otool=fhcrclib

Stone D,Niyonzima N,Jerome KR. (2016). Genome editing and the next generation of antiviral therapy. Hum Genet.
Full-text Article: http://scholars.fhcrc.org/9846/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27272125/?otool=fhcrclib

Vindigni SM,Taylor J,Quilter LA,Hyun TS,Liu C,Rosinski SL,Rakita RM,Fredricks DN,Damman CJ. (2016). Tropheryma whipplei infection (Whipple's disease) in a patient after liver transplantation. Transpl Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9834/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27258480/?otool=fhcrclib

Wamalwa D,Benki-Nugent S,Langat A,Tapia K,Ngugi E,Moraa H,Maleche-Obimbo E,Otieno V,Inwani I,Richardson BA,Chohan B,Overbaugh J,John-Stewart GC. (2016). Treatment interruption after 2-year antiretroviral treatment (ART) initiated during acute/early HIV in infancy: a randomized trial. Aids.
Full-text Article: http://scholars.fhcrc.org/9663/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27177316/?otool=fhcrclib

Ying R,Sharma M,Celum C,Baeten JM,van Rooyen H,Hughes JP,Garnett G,Barnabas RV. (2016). Home testing and counselling to reduce HIV incidence in a generalised epidemic setting: a mathematical modelling analysis. Lancet HIV, 3(6), e275-82.
Full-text Article: http://scholars.fhcrc.org/9788/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27240790/?otool=fhcrclib

May

Balkus JE,Brown ER,Hillier SL,Coletti A,Ramjee G,Mgodi N,Makanani B,Reid C,Martinson F,Soto-Torres L,Abdool Karim SS,Chirenje ZM. (2016). Corrigendum to "oral and injectable contraceptive use and HIV acquisition risk among women in four African countries: a secondary analysis of data from a microbicide trial" [contraception 2016; 93 (1): 25-31]. Contraception 
Full-text Article: http://scholars.fhcrc.org/9474/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27085419/?otool=fhcrclib

Barnabas RV,van Rooyen H,Tumwesigye E,Brantley J,Baeten JM,van Heerden A,Turyamureeba B,Joseph P,Krows M,Thomas KK,Schaafsma TT,Hughes JP,Celum C. (2016). Uptake of antiretroviral therapy and male circumcision after community-based HIV testing and strategies for linkage to care versus standard clinic referral: a multisite, open-label, randomised controlled trial in South Africa and Uganda. Lancet HIV, 3(5), e212-20.
Full-text Article: http://scholars.fhcrc.org/9547/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27126488/?otool=fhcrclib

Buser JR,Zhang X,Byrnes SA,Ladd PD,Heiniger EK,Wheeler MD,Bishop JD,Englund JA,Lutz B,Weigl BH,Yager P. (2016). A disposable chemical heater and dry enzyme preparation for lysis and extraction of DNA and RNA from microorganisms. Analytical Methods, 8(14), 2880-2886.
Full-text Article: http://scholars.fhcrc.org/9578/
PubMed Record: N/A

Chao DL,Dimitrov DT. (2016). Seasonality and the effectiveness of mass vaccination. Math Biosci Eng, 13(2), 249-59.
Full-text Article: http://scholars.fhcrc.org/9506/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27105983/?otool=fhcrclib

Finak G,Gottardo R. (2016). Promises and Pitfalls of High-Throughput Biological Assays. Methods Mol Biol, 1415, 225-43.
Full-text Article: http://scholars.fhcrc.org/9555/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27115636/?otool=fhcrclib

Gray GE,Mayer KH,Elizaga ML,Bekker LG,Allen M,Morris L,Montefiori D,De Rosa SC,Sato A,Gu N,Tomaras GD,Tucker T,Barnett SW,Mkhize NN,Shen X,Downing K,Williamson C,Pensiero M,Corey L,Williamson AL. (2016). Subtype C gp140 vaccine boosts immune responses primed by SAAVI DNA-C2 and MVA-C HIV vaccine after more than a two year gap (HVTN 073E/SAAVI 102). Clin Vaccine Immunol 
Full-text Article: http://scholars.fhcrc.org/9511/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27098021/?otool=fhcrclib

Hayes PJ,Cox JH,Coleman AR,Fernandez N,Bergin PJ,Kopycinski JT,Nitayaphan S,Pitisuttihum P,de Souza M,Duerr A,Morgan C,Gilmour JW. (2016). Adenovirus based HIV-1 vaccine candidates tested in efficacy trials elicit CD8 T-cells with limited breadth of HIV-1 inhibition. Aids 
Full-text Article: http://scholars.fhcrc.org/9514/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27088318/?otool=fhcrclib

Imholte G,Gottardo R. (2016). Bayesian hierarchical modeling for subject-level response classification in peptide microarray immunoassays. Biometrics 
Full-text Article: http://scholars.fhcrc.org/9489/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27061097/?otool=fhcrclib

Kenah E,Britton T,Halloran ME,Longini IM, Jr.. (2016). Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees. PLoS Comput Biol, 12(4), e1004869.
Full-text Article: http://scholars.fhcrc.org/9495/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27070316/?otool=fhcrclib

Lal M,Jarrahian C,Zhu C,Hosken NA,McClurkan CL,Koelle DM,Saxon E,Roehrig A,Zehrung D,Chen D. (2016). Stability of live attenuated rotavirus vaccine with selected preservatives and primary containers. Vaccine 
Full-text Article: http://scholars.fhcrc.org/9496/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27085171/?otool=fhcrclib

Lhomme E,Richert L,Moodie Z,Pasin C,Kalams SA,Morgan C,Self S,De Rosa SC,Thiebaut R. (2016). Early CD4+ T Cell Responses Are Associated with Subsequent CD8+ T Cell Responses to an rAd5-Based Prophylactic Prime-Boost HIV Vaccine Strategy. PLoS One, 11(4), e0152952.
Full-text Article: http://scholars.fhcrc.org/9569/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27124598/?otool=fhcrclib

Milligan ID,Gibani MM,Sewell R,Clutterbuck EA,Campbell D,Plested E,Nuthall E,Voysey M,Silva-Reyes L,McElrath MJ,De Rosa SC,Frahm N,Cohen KW,Shukarev G,Orzabal N,van Duijnhoven W,Truyers C,Bachmayer N,Splinter D,Samy N,Pau MG,Schuitemaker H,Luhn K,Callendret B,Van Hoof J,Douoguih M,Ewer K,Angus B,Pollard AJ,Snape MD. (2016). Safety and Immunogenicity of Novel Adenovirus Type 26- and Modified Vaccinia Ankara-Vectored Ebola Vaccines: A Randomized Clinical Trial. Jama, 315(15), 1610-23.
Full-text Article: http://scholars.fhcrc.org/9519/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27092831/?otool=fhcrclib

Milman N,Zhu J,Johnston C,Cheng A,Magaret A,Koelle DM,Huang ML,Jin L,Klock A,Layton ED,Corey L. (2016). In Situ Detection of Regulatory T Cells in Human Genital Herpes Simplex Virus Type 2 (HSV-2) Reactivation and Their Influence on Spontaneous HSV-2 Reactivation. J Infect Dis 
Full-text Article: http://scholars.fhcrc.org/9562/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27117511/?otool=fhcrclib

Moodley N,Gray G,Bertram M. (2016). Projected economic evaluation of the national implementation of a hypothetical HIV vaccination program among adolescents in South Africa, 2012. BMC Public Health, 16(1), 330. PMCID: PMC4832469.
Full-text Article: http://scholars.fhcrc.org/9465/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27079900/?otool=fhcrclib

Nghiem PT,Bhatia S,Lipson EJ,Kudchadkar RR,Miller NJ,Annamalai L,Berry S,Chartash EK,Daud A,Fling SP,Friedlander PA,Kluger HM,Kohrt HE,Lundgren L,Margolin K,Mitchell A,Olencki T,Pardoll DM,Reddy SA,Shantha EM,Sharfman WH,Sharon E,Shemanski LR,Shinohara MM,Sunshine JC,Taube JM,Thompson JA,Townson SM,Yearley JH,Topalian SL,Cheever MA. (2016). PD-1 Blockade with Pembrolizumab in Advanced Merkel-Cell Carcinoma. N Engl J Med 
Full-text Article: http://scholars.fhcrc.org/9523/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27093365/?otool=fhcrclib

Ojikutu BO,Pathak S,Srithanaviboonchai K,Limbada M,Friedman R,Li S,Mimiaga MJ,Mayer KH,Safren SA. (2016). Community Cultural Norms, Stigma and Disclosure to Sexual Partners among Women Living with HIV in Thailand, Brazil and Zambia (HPTN 063). PLoS One, 11(5), e0153600.
Full-text Article: http://scholars.fhcrc.org/9619/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27152618/?otool=fhcrclib

Roychoudhury P,De Silva Feelixge HS,Pietz HL,Stone D,Jerome KR,Schiffer JT. (2016). Pharmacodynamics of anti-HIV gene therapy using viral vectors and targeted endonucleases. J Antimicrob Chemother 
Full-text Article: http://scholars.fhcrc.org/9522/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27090632/?otool=fhcrclib

Seo S,Gooley TA,Kuypers JM,Stednick Z,Jerome KR,Englund JA,Boeckh M. (2016). Human Metapneumovirus Infections following Hematopoietic Cell Transplantation: Factors Associated with Disease Progression. Clin Infect Dis 
Full-text Article: http://scholars.fhcrc.org/9603/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27143659/?otool=fhcrclib

Wilson KS,Deya R,Yuhas K,Simoni J,Vander Stoep A,Shafi J,Jaoko W,Hughes JP,Richardson BA,McClelland RS. (2016). A Prospective Cohort Study of Intimate Partner Violence and Unprotected Sex in HIV-Positive Female Sex Workers in Mombasa, Kenya. AIDS Behav 
Full-text Article: http://scholars.fhcrc.org/9532/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27094785/?otool=fhcrclib

Xi LF,Schiffman M,Koutsky LA,Hughes JP,Hulbert A,Shen Z,Galloway DA,Kiviat NB. (2016). Variant-Specific Persistence of Infections with Human Papillomavirus Types 31, 33, 45, 56 and 58 and Risk of Cervical Intraepithelial Neoplasia. Int J Cancer 
Full-text Article: http://scholars.fhcrc.org/9566/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27121353/?otool=fhcrclib

Zurawski G,Zurawski S,Flamar AL,Richert L,Wagner R,Tomaras GD,Montefiori DC,Roederer M,Ferrari G,Lacabaratz C,Bonnabau H,Klucar P,Wang Z,Foulds KE,Kao SF,Yates NL,LaBranche C,Jacobs BL,Kibler K,Asbach B,Kliche A,Salazar A,Reed S,Self S,Gottardo R,Galmin L,Weiss D,Cristillo A,Thiebaut R,Pantaleo G,Levy Y. (2016). Targeting HIV-1 Env gp140 to LOX-1 Elicits Immune Responses in Rhesus Macaques. PLoS One, 11(4), e0153484.
Full-text Article: http://scholars.fhcrc.org/9468/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27077384/?otool=fhcrclib

April

Chu HY,Katz J,Tielsch J,Khatry SK,Shrestha L,LeClerq SC,Magaret A,Kuypers J,Steinhoff MC,Englund JA. (2016). Clinical Presentation and Birth Outcomes Associated with Respiratory Syncytial Virus Infection in Pregnancy. PLoS One, 11(3), e0152015.
Full-text Article: http://scholars.fhcrc.org/9341/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27031702/?otool=fhcrclib

Cybis GB,Sinsheimer JS,Bedford T,Mather AE,Lemey P,Suchard MA. (2015). ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. Ann Appl Stat, 9(2), 969-991. PMCID: PMC4820077.
Full-text Article: http://scholars.fhcrc.org/9393/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27053974/?otool=fhcrclib

Edlefsen PT,Birkmann A,Huang ML,Magaret CA,Kee JJ,Diem K,Goldner T,Timmler B,Stoelben S,Ruebsamen-Schaeff H,Zimmermann H,Warren T,Wald A,Corey L. (2016). No evidence of resistance of HSV-2 to pritelivir following four weeks of daily therapy. J Infect Dis 
Full-text Article: http://scholars.fhcrc.org/9401/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27056950/?otool=fhcrclib

Fang LQ,Yang Y,Jiang JF,Yao HW,Kargbo D,Li XL,Jiang BG,Kargbo B,Tong YG,Wang YW,Liu K,Kamara A,Dafae F,Kanu A,Jiang RR,Sun Y,Sun RX,Chen WJ,Ma MJ,Dean NE,Thomas H,Longini IM, Jr.,Halloran ME,Cao WC. (2016). Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/9344/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27035948/?otool=fhcrclib

Fisher CE,Alexander J,Bhattacharya R,Rakita RM,Kirby KA,Boeckh M,Limaye AP. (2016). Sensitivity of blood and tissue diagnostics for gastrointestinal cytomegalovirus disease in solid organ transplant recipients. Transpl Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9284/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27004439/?otool=fhcrclib

Fong Y,Yin S,Huang Y. (2016). Combining biomarkers linearly and nonlinearly for classification using the area under the ROC curve. Stat Med 
Full-text Article: http://scholars.fhcrc.org/9405/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27058981/?otool=fhcrclib

Freeman S,Okoroafor NO,Gast CM,Koval M,Nowowiejski D,O'Connor E,Harrington RD,Parks JW,Fang FC. (2016). Crowdsourced Data Indicate Widespread Multidrug Resistance in Skin Flora of Healthy Young Adults. J Microbiol Biol Educ, 17(1), 172-82. PMCID: PMC4798803.
Full-text Article: http://scholars.fhcrc.org/9407/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27047615/?otool=fhcrclib

Fu R,Gilbert PB. (2016). Joint modeling of longitudinal and survival data with the Cox model and two-phase sampling. Lifetime Data Anal.
Full-text Article: http://scholars.fhcrc.org/9286/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27007859/?otool=fhcrclib

Gabriel EE,Daniels MJ,Halloran ME. (2016). Comparing biomarkers as trial level general surrogates. Biometrics.
Full-text Article: http://scholars.fhcrc.org/9345/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27038302/?otool=fhcrclib

Gilbert PB,Janes HE,Huang Y. (2016). Power/sample size calculations for assessing correlates of risk in clinical efficacy trials. Stat Med.
Full-text Article: http://scholars.fhcrc.org/9348/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27037797/?otool=fhcrclib

Harvey WT,Benton DJ,Gregory V,Hall JP,Daniels RS,Bedford T,Haydon DT,Hay AJ,McCauley JW,Reeve R. (2016). Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses. PLoS Pathog, 12(4), e1005526.
Full-text Article: http://scholars.fhcrc.org/9411/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27057693/?otool=fhcrclib

Humbert O,Gisch DW,Wohlfahrt ME,Adams AB,Greenberg PD,Schmitt TM,Trobridge GD,Kiem HP. (2016). Development of 3 Generation Cocal Envelope Producer Cell Lines for Robust Lentiviral Gene Transfer into Hematopoietic Stem Cells and T Cells. Mol Ther 
Full-text Article: http://scholars.fhcrc.org/9413/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27058824/?otool=fhcrclib

Jardine JG,Kulp DW,Havenar-Daughton C,Sarkar A,Briney B,Sok D,Sesterhenn F,Ereno-Orbea J,Kalyuzhniy O,Deresa I,Hu X,Spencer S,Jones M,Georgeson E,Adachi Y,Kubitz M,deCamp AC,Julien JP,Wilson IA,Burton DR,Crotty S,Schief WR. (2016). HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen. Science, 351(6280), 1458-63.
Full-text Article: http://scholars.fhcrc.org/9290/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27013733/?otool=fhcrclib

Kyle JE,Zhang X,Weitz KK,Monroe ME,Ibrahim YM,Moore RJ,Cha J,Sun XF,Lovelace ES,Wagoner J,Polyak SJ,Metz TO,Dey SK,Smith RD,Burnum-Johnson KE,Baker ES. (2016). Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. Analyst, 141(5), 1649-1659.
Full-text Article: http://scholars.fhcrc.org/9320/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26734689/?otool=fhcrclib

Mugwanya K,Baeten J,Celum C,Donnell D,Nickolas T,Mugo N,Branch A,Tappero J,Kiarie J,Ronald A,Yin M,Wyatt C. (2016). Low risk of Proximal Tubular Dysfunction Associated with Emtricitabine-Tenofovir Disoproxil Fumarate Pre-Exposure Prophylaxis in Men and Women. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9359/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27029778/?otool=fhcrclib

Peng X,Li SS,Gilbert PB,Geraghty DE,Katze MG. (2016). FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-gamma Receptors in Human B Cells. PLoS One, 11(3), e0152425.
Full-text Article: http://scholars.fhcrc.org/9303/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27015273/?otool=fhcrclib

Pepe MS,Janes H,Li CI,Bossuyt PM,Feng Z,Hilden J. (2016). Early-Phase Studies of Biomarkers: What Target Sensitivity and Specificity Values Might Confer Clinical Utility?. Clin Chem.
Full-text Article: http://scholars.fhcrc.org/9307/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27001493/?otool=fhcrclib

Radtke S,Haworth KG,Kiem HP. (2016). The frequency of multipotent CD133+CD45RA-CD34+ hematopoietic stem cells is not increased in fetal liver compared to adult stem cell sources. Exp Hematol.
Full-text Article: http://scholars.fhcrc.org/9308/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27016273/?otool=fhcrclib

Ramanathan M,Teira P,Battiwalla M,Barrett J,Ahn KW,Chen M,Green J,Laughlin M,Lazarus HM,Marks D,Saad A,Seftel M,Saber W,Savani B,Waller E,Wingard J,Auletta JJ,Lindemans CA,Boeckh M,Riches ML. (2016). Impact of early CMV reactivation in cord blood stem cell recipients in the current era. Bone Marrow Transplant 
Full-text Article: http://scholars.fhcrc.org/9412/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27042847/?otool=fhcrclib

Ritchwood TD,Hughes JP,Jennings L,MacPhail C,Williamson B,Selin A,Kahn K,Gomez-Olive FX,Pettifor A. (2016). Characteristics of Age-discordant Partnerships Associated with HIV Risk Among Young South African Women (HPTN 068). J Acquir Immune Defic Syndr 
Full-text Article: http://scholars.fhcrc.org/9211/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26977748/?otool=fhcrclib

Scharf L,West AP,Sievers SA,Chen C,Jiang S,Gao H,Gray MD,McGuire AT,Scheid JF,Nussenzweig MC,Stamatatos L,Bjorkman PJ. (2016). Structural basis for germline antibody recognition of HIV-1 immunogens. Elife, 5.
Full-text Article: http://scholars.fhcrc.org/9281/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26997349/?otool=fhcrclib

Shu Z,Hughes SM,Fang C,Hou Z,Zhao G,Fialkow M,Lentz G,Hladik F,Gao D. (2016). Determination of the Membrane Permeability to Water of Human Vaginal Mucosal Immune Cells at Subzero Temperatures Using Differential Scanning Calorimetry. Biopreserv Biobank.
Full-text Article: http://scholars.fhcrc.org/9220/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26977578/?otool=fhcrclib

Shu Z,Hughes SM,Fang C,Huang J,Fu B,Zhao G,Fialkow M,Lentz G,Hladik F,Gao D. (2016). A Study of the Osmotic Characteristics, Water Permeability, and Cryoprotectant Permeability of Human Vaginal Immune Cells. Cryobiology.
Full-text Article: http://scholars.fhcrc.org/9221/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26976225/?otool=fhcrclib

Smith TC,Kim JH,Gast CM,Benefield RJ. (2016). Pharmacokinetics of acyclovir in a morbidly obese patient with renal impairment. Int J Antimicrob Agents.
Full-text Article: http://scholars.fhcrc.org/9293/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27006000/?otool=fhcrclib

Soerens AG,Da Costa A,Lund JM. (2016). Regulatory T cells are essential to promote proper CD4 T-cell priming upon mucosal infection. Mucosal Immunol.
Full-text Article: http://scholars.fhcrc.org/9294/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27007674/?otool=fhcrclib

Spragg C,De Silva Feelixge H,Jerome KR. (2016). Cell and gene therapy strategies to eradicate HIV reservoirs. Curr Opin HIV AIDS.
Full-text Article: http://scholars.fhcrc.org/9333/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27031009/?otool=fhcrclib

Sun Y,Qian X,Shou Q,Gilbert PB. (2016). Analysis of two-phase sampling data with semiparametric additive hazards models. Lifetime Data Anal.
Full-text Article: http://scholars.fhcrc.org/9228/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26995733/?otool=fhcrclib

Tang H,Partyka K,Hsueh P,Sinha JY,Kletter D,Zeh H,Huang Y,Brand RE,Haab BB. (2016). Glycans related to the CA19-9 antigen are increased in distinct subsets of pancreatic cancers and improve diagnostic accuracy over CA19-9. Cell Mol Gastroenterol Hepatol, 2(2), 210-221.e15. PMCID: PMC4792034.
Full-text Article: http://scholars.fhcrc.org/9304/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26998508/?otool=fhcrclib  

Tjernlund A,Burgener A,Lindvall JM,Peng T,Zhu J,Ohrmalm L,Picker LJ,Broliden K,McElrath MJ,Corey L. (2016). In Situ Staining and Laser Capture Microdissection of Lymph Node Residing SIV Gag-Specific CD8+ T cells-A Tool to Interrogate a Functional Immune Response Ex Vivo. PLoS One, 11(3), e0149907.
Full-text Article: http://scholars.fhcrc.org/9243/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26986062/?otool=fhcrclib  

Winer RL,Hughes JP,Feng Q,Stern JE,Xi LF,Koutsky LA. (2016). Incident Detection of High-Risk Human Papillomavirus Infections in a Cohort of High-Risk Women Aged 25-65 Years. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9306/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/27009602/?otool=fhcrclib 

March

Aghaeepour N,Chattopadhyay P,Chikina M,Dhaene T,Van Gassen S,Kursa M,Lambrecht BN,Malek M,McLachlan GJ,Qian Y,Qiu P,Saeys Y,Stanton R,Tong D,Vens C,Walkowiak S,Wang K,Finak G,Gottardo R,Mosmann T,Nolan GP,Scheuermann RH,Brinkman RR. (2016). A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry Part A, 89A(1), 16-21.
Full-text Article: http://scholars.fhcrc.org/8147/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26447924/?otool=fhcrclib

Asbach B,Kliche A,Kostler J,Perdiguero B,Esteban M,Jacobs BL,Montefiori DC,LaBranche CC,Yates NL,Tomaras GD,Ferrari G,Foulds KE,Roederer M,Landucci G,Forthal DN,Seaman MS,Hawkins N,Self SG,Sato A,Gottardo R,Phogat S,Tartaglia J,Barnett SW,Burke B,Cristillo AD,Weiss DE,Francis J,Galmin L,Ding S,Heeney JL,Pantaleo G,Wagner R. (2016). Streamlining Heterologous DNA-Prime and NYVAC/Protein-Boost HIV Vaccine Regimens in Rhesus Macaques by Employing Improved Antigens. J Virol.
Full-text Article: http://scholars.fhcrc.org/8853/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26865719/?otool=fhcrclib

Baeten JM,Palanee-Phillips T,Brown ER,Schwartz K,Soto-Torres LE,Govender V,Mgodi NM,Matovu Kiweewa F,Nair G,Mhlanga F,Siva S,Bekker LG,Jeenarain N,Gaffoor Z,Martinson F,Makanani B,Pather A,Naidoo L,Husnik M,Richardson BA,Parikh UM,Mellors JW,Marzinke MA,Hendrix CW,van der Straten A,Ramjee G,Chirenje ZM,Nakabiito C,Taha TE,Jones J,Mayo A,Scheckter R,Berthiaume J,Livant E,Jacobson C,Ndase P,White R,Patterson K,Germuga D,Galaska B,Bunge K,Singh D,Szydlo DW,Montgomery ET,Mensch BS,Torjesen K,Grossman CI,Chakhtoura N,Nel A,Rosenberg Z,McGowan I,Hillier S. (2016). Use of a Vaginal Ring Containing Dapivirine for HIV-1 Prevention in Women. N Engl J Med.
Full-text Article: http://scholars.fhcrc.org/8960/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26900902/?otool=fhcrclib

Balkus JE,Brown E,Palanee T,Nair G,Gafoor Z,Zhang J,Richardson BA,Chirenje ZM,Marrazzo JM,Baeten JM. (2016). An Empiric HIV Risk Scoring Tool to Predict HIV-1 Acquisition in African Women. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8942/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26918545/?otool=fhcrclib

Balkus JE,Manhart LE,Lee J,Anzala O,Kimani J,Schwebke J,Shafi J,Rivers C,Kabare E,McClelland RS. (2016). Periodic presumptive treatment for vaginal infections may reduce the incidence of bacterial sexually transmitted infections. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8966/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908758/?otool=fhcrclib

Bender Ignacio RA,Goldman JD,Magaret AS,Selke S,Huang ML,Gantt S,Johnston C,Phipps WT,Schiffer JT,Zuckerman RA,McClelland RS,Celum C,Corey L,Wald A,Casper C. (2016). Patterns of human herpesvirus-8 oral shedding among diverse cohorts of human herpesvirus-8 seropositive persons. Infect Agent Cancer, 11, 7. PMCID: PMC4748452.
Full-text Article: http://scholars.fhcrc.org/8854/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26865856/?otool=fhcrclib

Boeckh M,Gilbert PB. (2016). Search continues for a CMV vaccine for transplant recipients. Lancet Haematol, 3(2), e58-9.
Full-text Article: http://scholars.fhcrc.org/8855/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26853642/?otool=fhcrclib

Bosire R,Betz B,Aluisio A,Hughes JP,Nduati R,Kiarie J,Chohan BH,Merkel M,Lohman-Payne B,John-Stewart G,Farquhar C. (2016). High Rates of Exclusive Breastfeeding in Both Arms of a Peer Counseling Study Promoting EBF Among HIV-Infected Kenyan Women. Breastfeed Med.
Full-text Article: http://scholars.fhcrc.org/8903/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26885769/?otool=fhcrclib

Coley RY,Brown ER. (2016). Estimating effectiveness in HIV prevention trials with a Bayesian hierarchical compound Poisson frailty model. Stat Med.
Full-text Article: http://scholars.fhcrc.org/8873/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26869051/?otool=fhcrclib

Dean NE,Halloran ME,Yang Y,Longini IM. (2016). The transmissibility and pathogenicity of Ebola virus: a systematic review and meta-analysis of household secondary attack rate and asymptomatic infection. Clin Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8991/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26932131/?otool=fhcrclib

Dimitrov DT,BR MA,Donnell D. (2016). PrEP adherence patterns strongly impact individual HIV risk and observed efficacy in randomized clinical trials. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/9190/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26990823/?otool=fhcrclib

Dimitrov DT,Kiem HP,Jerome KR,Johnston C,Schiffer JT. (2016). A curative regimen would decrease HIV prevalence but not HIV incidence unless targeted to an ART-naive population. Sci Rep, 6, 22183.
Full-text Article: http://scholars.fhcrc.org/8950/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908162/?otool=fhcrclib

Finak G,Langweiler M,Jaimes M,Malek M,Taghiyar J,Korin Y,Raddassi K,Devine L,Obermoser G,Pekalski ML,Pontikos N,Diaz A,Heck S,Villanova F,Terrazzini N,Kern F,Qian Y,Stanton R,Wang K,Brandes A,Ramey J,Aghaeepour N,Mosmann T,Scheuermann RH,Reed E,Palucka K,Pascual V,Blomberg BB,Nestle F,Nussenblatt RB,Brinkman RR,Gottardo R,Maecker H,McCoy JP. (2016). Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium. Sci Rep, 6, 20686.
Full-text Article: http://scholars.fhcrc.org/8868/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26861911/?otool=fhcrclib

Fiore-Gartland A,Manso BA,Friedrich DP,Gabriel EE,Finak G,Moodie Z,Hertz T,De Rosa SC,Frahm N,Gilbert PB,McElrath MJ. (2016). Pooled-Peptide Epitope Mapping Strategies Are Efficient and Highly Sensitive: An Evaluation of Methods for Identifying Human T Cell Epitope Specificities in Large-Scale HIV Vaccine Efficacy Trials. PLoS One, 11(2), e0147812.
Full-text Article: http://scholars.fhcrc.org/8870/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26863315/?otool=fhcrclib

Fogel JM,Hudelson SE,Ou SS,Hart S,Wallis C,Morgado MG,Saravanan S,Tripathy S,Hovind L,Piwowar-Manning E,Sabin D,McCauley M,Gamble T,Zhang XC,Eron JJ,Gallant JE,Kumwenda J,Makhema J,Kumarasamy N,Chariyalertsak S,Hakim J,Badal-Faesen S,Akelo V,Hosseinipour MC,Santos BR,Godbole SV,Pilotto JH,Grinsztejn B,Panchia R,Mayer KH,Chen YQ,Cohen MS,Eshleman SH. (2016). HIV drug resistance in adults failing early antiretroviral treatment: results from the HIV Prevention Trials Network 052 trial. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8863/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26859828/?otool=fhcrclib

Fu P,Hughes J,Zeng G,Hanook S,Orem J,Mwanda OW,Remick SC. (2016). A comparative investigation of methods for longitudinal data with limits of detection through a case study. Statistical Methods in Medical Research, 25(1), 153-166.
Full-text Article: http://scholars.fhcrc.org/9074/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/22504231/?otool=fhcrclib

Gantt S,Orem J,Krantz EM,Morrow RA,Selke S,Huang ML,Schiffer JT,Jerome KR,Nakaganda A,Wald A,Casper C,Corey L. (2016). Prospective characterization of the risk factors for transmission and symptoms of primary human herpesvirus infections among Ugandan infants. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8936/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26917575/?otool=fhcrclib

Ghassemieh BJ,Attia EF,Koelle DM,Mancuso JD,Narita M,Horne DJ. (2016). Latent Tuberculosis Infection Test Agreement in the National Health and Nutrition Examination Survey. Am J Respir Crit Care Med.
Full-text Article: http://scholars.fhcrc.org/8911/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26890477/?otool=fhcrclib

Gray GE,Laher F,Doherty T,Abdool Karim S,Hammer S,Mascola J,Beyrer C,Corey L. (2016). Which New Health Technologies Do We Need to Achieve an End to HIV/AIDS?. PLoS Biol, 14(3), e1002372.
Full-text Article: http://scholars.fhcrc.org/8979/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26933962/?otool=fhcrclib

Gray GE,Laher F,Lazarus E,Ensoli B,Corey L. (2016). Approaches to preventative and therapeutic HIV vaccines. Curr Opin Virol, 17, 104-109.
Full-text Article: http://scholars.fhcrc.org/9197/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26985884/?otool=fhcrclib

Green ML,Leisenring W,Xie H,Mast TC,Cui Y,Sandmaier BM,orror ML,Goyal S,Ozkok S,Yi J,Sahoo F,Kimball LE,Jerome KR,Marks MA,Boeckh M. (2016). Cytomegalovirus viral load and mortality after haemopoietic stem cell transplantation in the era of pre-emptive therapy: a retrospective cohort study. Lancet Haematol, 3(3), e119-27.
Full-text Article: http://scholars.fhcrc.org/9084/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26947200/?otool=fhcrclib

Green RR,Wilkins C,Pattabhi S,Dong R,Loo Y,Gale M, Jr.. (2016). Transcriptional analysis of antiviral small molecule therapeutics as agonists of the RLR pathway. Genom Data, 7, 290-2. PMCID: PMC4778670.
Full-text Article: http://scholars.fhcrc.org/9198/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26981429/?otool=fhcrclib

Greninger AL,Jerome KR. (2016). Draft Genome Sequence of Goose Dicistrovirus. Genome Announc, 4(2).
Full-text Article: http://scholars.fhcrc.org/8983/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26941149/?otool=fhcrclib

Hall Sedlak R,Hill JA,Nguyen T,Cho M,Levin G,Cook L,Huang ML,Flamand L,Zerr DM,Boeckh M,Jerome KR. (2016). Detection of HHV-6B reactivation in hematopoietic cell transplant recipients with inherited chromosomally integrated HHV-6A by droplet digital PCR. J Clin Microbiol.
Full-text Article: http://scholars.fhcrc.org/8907/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26888901/?otool=fhcrclib

Havenar-Daughton C,Lindqvist M,Heit A,Wu JE,Reiss SM,Kendric K,Belanger S,Kasturi SP,Landais E,Akondy RS,McGuire HM,Bothwell M,Vagefi PA,Scully E,Tomaras GD,Davis MM,Poignard P,Ahmed R,Walker BD,Pulendran B,McElrath MJ,Kaufmann DE,Crotty S. (2016). CXCL13 is a plasma biomarker of germinal center activity. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/8968/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908875/?otool=fhcrclib

Heddle NM,Boeckh M,Grossman B,Jacobson J,Kleinman S,Tobian AA,Webert K,Wong EC,Roback JD. (2016). AABB Committee Report: reducing transfusion-transmitted cytomegalovirus infections. Transfusion.
Full-text Article: http://scholars.fhcrc.org/9088/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26968400/?otool=fhcrclib

Hessell AJ,Malherbe DC,Pissani F,McBurney S,Krebs SJ,Gomes M,Pandey S,Sutton WF,Burwitz BJ,Gray M,Robins H,Park BS,Sacha JB,LaBranche CC,Fuller DH,Montefiori DC,Stamatatos L,Sather DN,Haigwood NL. (2016). Achieving Potent Autologous Neutralizing Antibody Responses against Tier 2 HIV-1 Viruses by Strategic Selection of Envelope Immunogens. J Immunol.
Full-text Article: http://scholars.fhcrc.org/8984/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26944928/?otool=fhcrclib

Hill JA,HallSedlak R,Magaret A,Huang ML,Zerr DM,Jerome KR,Boeckh M. (2016). Efficient identification of inherited chromosomally integrated human herpesvirus 6 using specimen pooling. J Clin Virol, 77, 71-76.
Full-text Article: http://scholars.fhcrc.org/8947/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26921738/?otool=fhcrclib

Huang Y. (2016). Evaluating and comparing biomarkers with respect to the area under the receiver operating characteristics curve in two-phase case-control studies. Biostatistics.
Full-text Article: http://scholars.fhcrc.org/8899/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26883772/?otool=fhcrclib

Johnston C,Gottlieb SL,Wald A. (2016). Status of vaccine research and development of vaccines for herpes simplex virus prepared for WHO PD-VAC. Vaccine.
Full-text Article: http://scholars.fhcrc.org/9201/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26973067/?otool=fhcrclib

Karcher MD,Palacios JA,Bedford T,Suchard MA,Minin VN. (2016). Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. PLoS Comput Biol, 12(3), e1004789.
Full-text Article: http://scholars.fhcrc.org/8982/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26938243/?otool=fhcrclib

Khosropour CM,Dombrowski JC,Swanson F,Kerani RP,Katz DA,Barbee LA,Hughes JP,Manhart LE,Golden MR. (2016). Trends in serosorting and the association with HIV/STI risk over time among men who have sex with men (MSM). J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8904/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26885806/?otool=fhcrclib

Kohrt HE,Tumeh PC,Benson D,Bhardwaj N,Brody J,Formenti S,Fox BA,Galon J,June CH,Kalos M,Kirsch I,Kleen T,Kroemer G,Lanier L,Levy R,Lyerly HK,Maecker H,Marabelle A,Melenhorst J,Miller J,Melero I,Odunsi K,Palucka K,Peoples G,Ribas A,Robins H,Robinson W,Serafini T,Sondel P,Vivier E,Weber J,Wolchok J,Zitvogel L,Disis ML,Cheever MA. (2016). Immunodynamics: a cancer immunotherapy trials network review of immune monitoring in immuno-oncology clinical trials. J Immunother Cancer, 4, 15. PMCID: PMC4791805.
Full-text Article: http://scholars.fhcrc.org/9204/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26981245/?otool=fhcrclib

Leitman EM,Hurst J,Mori M,Kublin J,Ndung'u T,Walker BD,Carlson J,Gray GE,Matthews PC,Frahm N,Goulder PJ. (2016). Lower Viral Loads and Slower CD4 Decline in MRKAd5 HIV-1 Vaccinees Expressing Disease-Susceptible HLA-B*58:02. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9090/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26951820/?otool=fhcrclib

Marty FM,Ostrosky-Zeichner L,Cornely OA,Mullane KM,Perfect JR,Thompson GR, 3rd,Alangaden GJ,Brown JM,Fredricks DN,Heinz WJ,Herbrecht R,Klimko N,Klyasova G,Maertens JA,Melinkeri SR,Oren I,Pappas PG,Racil Z,Rahav G,Santos R,Schwartz S,Vehreschild JJ,Young JH,Chetchotisakd P,Jaruratanasirikul S,Kanj SS,Engelhardt M,Kaufhold A,Ito M,Lee M,Sasse C,Maher RM,Zeiher B,Vehreschild MJ. (2016). Isavuconazole treatment for mucormycosis: a single-arm open-label trial and case-control analysis. Lancet Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9093/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26969258/?otool=fhcrclib

McGuire AT,Gray MD,Dosenovic P,Gitlin AD,Freund NT,Petersen J,Correnti C,Johnsen W,Kegel R,Stuart AB,Glenn J,Seaman MS,Schief WR,Strong RK,Nussenzweig MC,Stamatatos L. (2016). Specifically modified Env immunogens activate B-cell precursors of broadly neutralizing HIV-1 antibodies in transgenic mice. Nat Commun, 7, 10618.
Full-text Article: http://scholars.fhcrc.org/8948/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26907590/?otool=fhcrclib

Menon MP,Njau JD,McFarland DA. (2016). Cost and Predictors of Care-Seeking Behaviors among Caregivers of Febrile Children-Uganda, 2009. Am J Trop Med Hyg.
Full-text Article: http://scholars.fhcrc.org/8898/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26880780/?otool=fhcrclib

Mensch BS,Brown ER,Liu K,Marrazzo J,Chirenje ZM,Gomez K,Piper J,Patterson K,van der Straten A. (2016). Reporting of Adherence in the VOICE Trial: Did Disclosure of Product Nonuse Increase at the Termination Visit?. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8932/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26906023/?otool=fhcrclib

Mirembe BG,Kelly CW,Mgodi N,Greenspan S,Dai JY,Mayo A,Piper J,Akello CA,Kiweewa FM,Magure T,Nakabiito C,Marrazzo JM,Chirenje ZM,Riddler SA. (2016). Bone Mineral Density Changes Among Young, Healthy African Women Receiving Oral Tenofovir for HIV Preexposure Prophylaxis. J Acquir Immune Defic Syndr, 71(3), 287-94.
Full-text Article: http://scholars.fhcrc.org/8867/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26866954/?otool=fhcrclib

Mugwanya KK,Wyatt C,Celum C,Donnell D,Kiarie J,Ronald A,Baeten JM. (2016). Reversibility of Glomerular Renal Function Decline in HIV-Uninfected Men and Women Discontinuing Emtricitabine-Tenofovir Disoproxil Fumarate Pre-Exposure Prophylaxis. J Acquir Immune Defic Syndr, 71(4), 374-80.
Full-text Article: http://scholars.fhcrc.org/8933/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26914909/?otool=fhcrclib

Neher RA,Bedford T,Daniels RS,Russell CA,Shraiman BI. (2016). Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/9095/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26951657/?otool=fhcrclib

Peterson CW,Haworth KG,Burke BP,Polacino P,Norman KK,Adair JE,Hu SL,Bartlett JS,Symonds GP,Kiem HP. (2016). Multilineage polyclonal engraftment of Cal-1 gene-modified cells and in vivo selection after SHIV infection in a nonhuman primate model of AIDS. Mol Ther Methods Clin Dev, 3, 16007. PMCID: PMC4765711.
Full-text Article: http://scholars.fhcrc.org/9096/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26958575/?otool=fhcrclib

Peterson CW,Wang J,Norman KK,Norgaard ZK,Humbert O,Tse CK,Yan JJ,Trimble RG,Shivak DA,Rebar EJ,Gregory PD,Holmes MC,Kiem HP. (2016). Long-term multi-lineage engraftment of genome-edited hematopoietic stem cells after autologous transplantation in nonhuman primates. Blood.
Full-text Article: http://scholars.fhcrc.org/9174/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26980728/?otool=fhcrclib

Pettifor A,MacPhail C,Selin A,Gomez-Olive FX,Rosenberg M,Wagner RG,Mabuza W,Hughes JP,Suchindran C,Piwowar-Manning E,Wang J,Twine R,Daniel T,Andrew P,Laeyendecker O,Agyei Y,Tollman S,Kahn K. (2016). HPTN 068: A Randomized Control Trial of a Conditional Cash Transfer to Reduce HIV Infection in Young Women in South Africa-Study Design and Baseline Results. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8913/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26891839/?otool=fhcrclib

Roxby AC,Fredricks DN,Odem-Davis K,Asbjornsdottir K,Masese L,Fiedler TL,De Rosa S,Jaoko W,Kiarie JN,Overbaugh J,McClelland RS. (2016). Changes in Vaginal Microbiota and Immune Mediators in HIV-1-Seronegative Kenyan Women Initiating Depot Medroxyprogesterone Acetate. J Acquir Immune Defic Syndr, 71(4), 359-66.
Full-text Article: http://scholars.fhcrc.org/8935/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26914908/?otool=fhcrclib

Sivagnanam S,Pergam SA. (2016). Legionellosis in Transplantation. Curr Infect Dis Rep, 18(3), 9.
Full-text Article: http://scholars.fhcrc.org/8891/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26857395/?otool=fhcrclib

Strong RK,Finton KA. (2016). The Broadly Neutralizing, Anti-HIV Antibody 4E10: an Open and Shut Case?. J Virol, 90(6), 3274-5.
Full-text Article: http://scholars.fhcrc.org/8944/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26921372/?otool=fhcrclib

Teira P,Battiwalla M,Ramanathan M,Barrett AJ,Ahn KW,Chen M,Green JS,Saad A,Antin JH,Savani BN,Lazarus HM,Seftel M,Saber W,Marks D,Aljurf M,Norkin M,Wingard JR,Lindemans CA,Boeckh M,Riches ML,Auletta JJ. (2016). Early cytomegalovirus reactivation remains associated with increased transplant related mortality in the current era: a CIBMTR analysis. Blood.
Full-text Article: http://scholars.fhcrc.org/8901/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26884374/?otool=fhcrclib

Waghmare A,Englund JA,Boeckh M. (2016). How I treat respiratory viral infections in the setting of intensive chemotherapy or hematopoietic cell transplantation. Blood.
Full-text Article: http://scholars.fhcrc.org/9083/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26968533/?otool=fhcrclib

February

Baden LR, Karita E, Mutua G, Bekker LG, Gray G, Page-Shipp L, Walsh SR, Nyombayire J, Anzala O, Roux S, Laher F, Innes C, Seaman MS, Cohen YZ, Peter L, Frahm N, McElrath MJ, Hayes P, Swann E, Grunenberg N, Grazia-Pau M, Weijtens M, Sadoff J, Dally L, Lombardo A, Gilmour J, Cox J, Dolin R, Fast P, Barouch DH, Laufer DS. (2016). Assessment of the Safety and Immunogenicity of 2 Novel Vaccine Platforms for HIV-1 Prevention: A Randomized Trial. Ann Intern Med.
Full-text Article: http://scholars.fhcrc.org/8822/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26833336/?otool=fhcrclib

Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH. (2016). Automated analysis of flow cytometry data comes of age. Cytometry A, 89(1), 13-5.
Full-text Article: http://scholars.fhcrc.org/8807/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26812230/?otool=fhcrclib

Deschamps MM, Metch B, Morgan CA, Zorilla CD, Donastorg Y, Swann E, Taina D, Patrice J, Pape WJ. (2016). Feasibility of Identifying a Female Sex Worker Cohort at High Risk of HIV Infection in the Caribbean for HIV Vaccine Efficacy Trials: Longitudinal Results of HVTN 907. J Acquir Immune Defic Syndr, 71(1), 70-7. PMCID: PMC4712715.
Full-text Article: http://scholars.fhcrc.org/8724/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761272/?otool=fhcrclib

Dimitrov D, Kublin JG, Ramsey S, Corey L. (2015). Are Clade Specific HIV Vaccines a Necessity? An Analysis Based on Mathematical Models. EBioMedicine, 2(12), 2062-9. PMCID: PMC4703729.
Full-text Article: http://scholars.fhcrc.org/8829/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26844286/?otool=fhcrclib

Fleming TR, Ellenberg SS. (2016). Evaluating interventions for Ebola: The need for randomized trials. Clin Trials.
Full-text Article: http://scholars.fhcrc.org/8706/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26768563/?otool=fhcrclib

Hammer MJ, Melkus GDE, Knobf MT, Casper C, Fletcher J, Cleland CM. (2016). Glycemic Status and Infection Risk in Nondiabetic Autologous Hematopoietic Cell Transplantation Recipients. Biol Res Nurs.
Full-text Article: http://scholars.fhcrc.org/8778/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26792914/?otool=fhcrclib

Huang Y, DiazGranados C, Janes H, Huang Y, deCamp AC, Metch B, Grant S, Sanchez B, Phogat S, Koutsoukos M, Kanesa-Thasan N, Bourguignon P, Collard A, Buchbinder S, Tomaras GD, McElrath J, Gray G, Kublin JG, Corey L, Gilbert PB. (2016). Selection of HIV vaccine candidates for concurrent testing in an efficacy trial. Curr Opin Virol, 17, 57-65.
Full-text Article: http://scholars.fhcrc.org/8820/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26827165/?otool=fhcrclib

Huang Y, Zhang L, Jolliffe D, Hovden AO, Okvist M, Pantaleo G, Sommerfelt MA. (2016). A case for preART-adjusted endpoints in HIV therapeutic vaccine trials. Vaccine.
Full-text Article: http://scholars.fhcrc.org/8798/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26826543/?otool=fhcrclib  

Jacobson JM, Zheng L, Wilson CC, Tebas P, Matining RM, Egan MA, Eldridge J, Landay AL, Clifford DB, Luetkemeyer AF, Tiu J, Martinez AL, Janik J, Spitz TA, Hural J, McElrath J, Frahm N. (2016). The Safety and Immunogenicity of an Interleukin-12-Enhanced Multiantigen DNA Vaccine Delivered by Electroporation for the Treatment of HIV-1 Infection. J Acquir Immune Defic Syndr, 71(2), 163-71. PMCID: PMC4712745.
Full-text Article: http://scholars.fhcrc.org/8708/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761518/?otool=fhcrclib  

Jing L, Laing KJ, Dong L, Russell RM, Barlow RS, Haas JG, Ramchandani MS, Johnston C, Buus S, Redwood AJ, White KD, Mallal SA, Phillips EJ, Posavad CM, Wald A, Koelle DM. (2016). Extensive CD4 and CD8 T Cell Cross-Reactivity between Alphaherpesviruses. J Immunol.
Full-text Article: http://scholars.fhcrc.org/8812/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26810224/?otool=fhcrclib  

Kyu HH, et al. (2016). Global and National Burden of Diseases and Injuries Among Children and Adolescents Between 1990 and 2013: Findings From the Global Burden of Disease 2013 Study. JAMA Pediatr.
Full-text Article: http://scholars.fhcrc.org/8801/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26810619/?otool=fhcrclib  

Lednicky JA, Iovine NM, Brew J, Loeb JC, Sugimoto JD, Rand KH, Morris JGJ. (2016). Hemagglutinin Gene Clade 3C.2a Influenza A(H3N2) Viruses, Alachua County, Florida, USA, 2014-15. Emerg Infect Dis, 22(1), 121-3. PMCID: PMC4696699.
Full-text Article: http://scholars.fhcrc.org/8774/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26692074/?otool=fhcrclib  

Lorenzo-Redondo R, Fryer HR, Bedford T, Kim EY, Archer J, Kosakovsky Pond SL, Chung YS, Penugonda S, Chipman JG, Fletcher CV, Schacker TW, Malim MH, Rambaut A, Haase AT, McLean AR, Wolinsky SM. (2016). Persistent HIV-1 replication maintains the tissue reservoir during therapy. Nature.
Full-text Article: http://scholars.fhcrc.org/8816/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26814962/?otool=fhcrclib  

Mather CA, Werth BJ, Sivagnanam S, SenGupta DJ, Butler-Wu SM. (2016). Rapid Detection of Vancomycin Intermediate Staphylococcus aureus (VISA) by Matrix Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS). J Clin Microbiol.
Full-text Article: http://scholars.fhcrc.org/8737/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26763961/?otool=fhcrclib  

Meyer AG, Spielman SJ, Bedford T, Wilke CO. (2015). Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak. Virus Evol, 1(1). PMCID: PMC4710376.
Full-text Article: http://scholars.fhcrc.org/8699/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26770819/?otool=fhcrclib  

Milligan C, Omenda MM, Chohan V, Odem-Davis K, Richardson BA, Nduati R, Overbaugh J. (2016). Maternal Neutralization-Resistant Virus Variants Do Not Predict Infant HIV Infection Risk. MBio, 7(1).
Full-text Article: http://scholars.fhcrc.org/8824/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26838723/?otool=fhcrclib  

Pergam SA. (2016). Infection Prevention in Transplantation. Curr Infect Dis Rep, 18(2), 7.
Full-text Article: http://scholars.fhcrc.org/8785/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26820654/?otool=fhcrclib  

Schiffer JT, Swan DA, Magaret A, Corey L, Wald A, Ossig J, Ruebsamen-Schaeff H, Stoelben S, Timmler B, Zimmermann H, Melhem MR, Van Wart SA, Rubino CM, Birkmann A. (2016). Mathematical modeling of herpes simplex virus-2 suppression with pritelivir predicts trial outcomes. Sci Transl Med, 8(324), 324ra15.
Full-text Article: http://scholars.fhcrc.org/8843/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26843190/?otool=fhcrclib  

Sedlak RH, Liang S,Niyonzima N, De Silva Feelixge HS, Roychoudhury P, Greninger AL, Weber ND, Boissel S, Scharenberg AM, Cheng A, Magaret A, Bumgarner R, Stone D, Jerome KR. (2016). Digital detection of endonuclease mediated gene disruption in the HIV provirus. Sci Rep, 6, 20064. PMCID: PMC4735761.
Full-text Article: http://scholars.fhcrc.org/8844/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26829887/?otool=fhcrclib  

Stachel D, Stevens-Ayers T, Boeckh M. (2015). In vitro studies of the impact of maribavir on CMV-specific cellular immune responses. J Clin Virol, 75, 53-59.
Full-text Article: http://scholars.fhcrc.org/8765/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26780109/?otool=fhcrclib  

Uy GL, et al. (2015). Contribution of chemotherapy mobilization to disease control in multiple myeloma treated with autologous hematopoietic cell transplantation. Bone Marrow Transplant, 50(12), 1513-8. PMCID: PMC4548821.
Full-text Article: http://scholars.fhcrc.org/8773/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26301967/?otool=fhcrclib  

van der Straten A, Brown ER, Marrazzo JM, Chirenje MZ, Liu K, Gomez K, Marzinke MA, Piper JM, Hendrix CW. (2016). Divergent adherence estimates with pharmacokinetic and behavioural measures in the MTN-003 (VOICE) study. J Int AIDS Soc, 19(1), 20642.
Full-text Article: http://scholars.fhcrc.org/8847/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26850270/?otool=fhcrclib  

van der Straten A, Panther L, Laborde N, Hoesley CJ, Cheng H, Husnik MJ, Horn S, Nel A, Soto-Torres L, Chen BA. (2016). Adherence and Acceptability of a Multidrug Vaginal Ring for HIV Prevention in a Phase I Study in the United States. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8848/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26837628/?otool=fhcrclib   

Vigdorovich V, Strong RK, Miller AD. (2016). Correction for Vigdorovich et al., Expression and Characterization of a Soluble, Active Form of the Jaagsiekte Sheep Retrovirus Receptor, Hyal2. J Virol, 90(4), 2159.
Full-text Article: http://scholars.fhcrc.org/8818/   
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26822597/?otool=fhcrclib  

Xu DR, Gong W, Caine ED, Xiao S, Hughes JP, Ng M, Simoni J, He H, Smith KL, Brown HSr, Gloyd S. (2016). Lay health supporters aided by a mobile phone messaging system to improve care of villagers with schizophrenia in Liuyang, China: protocol for a randomised control trial. BMJ Open, 6(1), e010120.
Full-text Article: http://scholars.fhcrc.org/8776/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26792221/?otool=fhcrclib  

Zhou JC, Chu HT, Hudgens MG, Halloran ME. (2016). A Bayesian approach to estimating causal vaccine effects on binary post-infection outcomes. Statistics in Medicine, 35(1), 53-64.
Full-text Article: http://scholars.fhcrc.org/8826/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26194767/?otool=fhcrclib  

January

Bender Ignacio RA, Lee JY, Rudek MA, Dittmer DP, Ambinder RF, Krown SE, Team AMCA-S. (2015). A phase 1b/pharmacokinetic trial of PTC299, a novel post-transcriptional VEGF inhibitor, for AIDS-related Kaposi's sarcoma: AIDS Malignancy Consortium trial 059. Journal of acquired immune deficiency syndromes.
Full-text Article:  http://scholars.fhcrc.org/8610/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26689971?otool=fhcrclib

Cheng G-S, Campbell AP, Xie H, Stednick Z, Callais C, Leisenring WM, Englund JA, Chien JW, Boeckh M. (2015). Correlation and Agreement of Handheld Spirometry with Laboratory Spirometry in Allogeneic Hematopoietic Cell Transplant Recipients. Biol Blood Marrow Transplant.
Full-text Article:  http://scholars.fhcrc.org/8669/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26748162?otool=fhcrclib

De Silva Feelixge HS, Stone D, Pietz HL, Roychoudhury P, Greninger AL, Schiffer JT, Aubert M, Jerome KR. (2016). Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy. Antiviral Res, 126, 90-8.
Full-text Article:  http://scholars.fhcrc.org/8656/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26718067?otool=fhcrclib

Deschamps MM, Metch B, Morgan CA, Zorilla CD, Donastorg Y, Swann E, Taina D, Patrice J, Pape WJ, Team HS. (2016). Feasibility of Identifying a Female Sex Worker Cohort at High Risk of HIV Infection in the Caribbean for HIV Vaccine Efficacy Trials: Longitudinal Results of HVTN 907. Journal of acquired immune deficiency syndromes, 71(1), 70-7.
Full-text Article:  http://scholars.fhcrc.org/8693/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761272?otool=fhcrclib

Fife KH, Mugwanya K, Thomas KK, Baeten JM, Celum C, Bukusi E, de Bruyn G, Mujugira A, Vwalika B, Wald A, Lingappa JR. (2015). Transient Increase in HSV-2-Associated Genital Ulcers Following Initiation of Antiretroviral Therapy in HIV-1/HSV-2 Co-Infected Individuals. J Infect Dis.
Full-text Article:  http://scholars.fhcrc.org/8606/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26704611?otool=fhcrclib

Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M, Linsley PS, Gottardo R. (2015). MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data. Genome Biol, 16, 278. PMCID: PMC4676162.
Full-text Article:  http://scholars.fhcrc.org/8595/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26653891?otool=fhcrclib

Gilbert PB, Gabriel EE, Huang Y, Chan ISF. (2015). Surrogate Endpoint Evaluation: Principal Stratification Criteria and the Prentice Definition. J Causal Inference, 3(2), 157-75. PMCID: PMC4692254.
Full-text Article:  http://scholars.fhcrc.org/8638/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26722639?otool=fhcrclib

Gilbert PB, Gabriel EE, Hudgens MG, Miao X, Li X, Su S-C, Parrino J, Chan ISF. (2015). Reply to Dunning. J Infect Dis, 212(9), 1521-3. PMCID: PMC4612359.
Full-text Article:  http://scholars.fhcrc.org/8567/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25985906?otool=fhcrclib

Pattacini L, Baeten JM, Thomas KK, Fluharty TR, Murnane PM, Donnell D, Bukusi E, Ronald A, Mugo N, Lingappa JR, Celum C, McElrath MJ, Lund JM. (2015). Regulatory T-cell activity but not conventional HIV-specific T-cell responses are associated with protection from HIV-1 infection. Journal of acquired immune deficiency syndromes.
Full-text Article:  http://scholars.fhcrc.org/8591/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26656786?otool=fhcrclib

Polyak CS, Yuhas K, Singa B, Khaemba M, Walson J, Richardson BA, John-Stewart G. (2016). Cotrimoxazole Prophylaxis Discontinuation among Antiretroviral-Treated HIV-1-Infected Adults in Kenya: A Randomized Non-inferiority Trial. PLoS Med, 13(1), e1001934.
Full-text Article:  http://scholars.fhcrc.org/8672/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26731191?otool=fhcrclib

Robertson K, Jiang H, Evans SR, Marra CM, Berzins B, Hakim J, Sacktor N, Silva MT, Campbell TB, Nair A, Schouten JT, Kumwenda J, Supparatpinyo K, Tripathy S, Kumarasamy N, la Rosa A, Montano S, Mwafongo A, Firnhaber C, Sanne I, Naini L, Amod F, Walawander A, Group ACT. (2016). International neurocognitive normative study: neurocognitive comparison data in diverse resource-limited settings: AIDS Clinical Trials Group A5271. J Neurovirol.
Full-text Article:  http://scholars.fhcrc.org/8688/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26733457?otool=fhcrclib

Ruel-Bergeron JC, Stevens GA, Sugimoto JD, Roos FF, Ezzati M, Black RE, Kraemer K. (2015). Global Update and Trends of Hidden Hunger, 1995-2011: The Hidden Hunger Index. PLoS One, 10(12), e0143497.
Full-text Article:  http://scholars.fhcrc.org/8579/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26673631?otool=fhcrclib

Weis JF, Baeten JM, McCoy CO, Warth C, Donnell D, Thomas KK, Hendrix CW, Marzinke MA, Mugo N, Iv FAM, Celum C, Lehman DA. (2016). Preexposure prophylaxis-selected drug resistance decays rapidly after drug cessation. Aids, 30(1), 31-5. PMCID: PMC4704103.
Full-text Article:  http://scholars.fhcrc.org/8666/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26731753?otool=fhcrclib

Williams KM, Ahn KW, Chen M, Aljurf MD, Agwu AL, Chen AR, Walsh TJ, Szabolcs P, Boeckh MJ, Auletta JJ, Lindemans CA, Zanis-Neto J, Malvezzi M, Lister J, de Toledo Codina JS, Sackey K, Chakrabarty JL, Ljungman P, Wingard JR, Seftel MD, Seo S, Hale GA, Wirk B, Smith MS, Savani BN, Lazarus HM, Marks DI, Ustun C, Abdel-Azim H, Dvorak CC, Szer J, Storek J, Yong A, Riches MR. (2016). The incidence, mortality and timing of Pneumocystis jiroveci pneumonia after hematopoietic cell transplantation: a CIBMTR analysis. Bone Marrow Transplant.
Full-text Article:  http://scholars.fhcrc.org/8675/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26726945?otool=fhcrclib


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