Vaccine and Infectious Disease Division

Recent Publications

Print outs of scientific publications

2017

May

Akello CA, Bunge KE, Nakabiito C, Mirembe BG, Fowler MG, Mishra A, Marrazzo J, Chirenje ZM, Celum C, Balkus JE. Contraceptive Use and Pregnancy Incidence Among Women Participating in an HIV Prevention Trial. J Womens Health (Larchmt). 2017 Feb 17.
Full-text Article: http://scholars.fhcrc.org/11539/

Balkus JE, Srinivasan S, Anzala O, Kimani J, Andac C, Schwebke J, Fredricks DN, McClelland RS. Impact of Periodic Presumptive Treatment for Bacterial Vaginosis on the Vaginal Microbiome among Women Participating in the Preventing Vaginal Infections Trial. J Infect Dis. 2017 Mar 1;215(5):723-731.
Full-text Article: http://scholars.fhcrc.org/11527/

Celum C, Hong T, Cent A, Donnell D, Morrow R, Baeten JM, Firnhaber C, Grinsztejn B, Hosseinipour MC, Lalloo U, Nyirenda M, Riviere C, Sanchez J, Santos B, Supparatpinyo K, Hakim J, Kumarasamy N, Campbell TB. Herpes Simplex Virus Type 2 Acquisition Among HIV-1-Infected Adults Treated With Tenofovir Disoproxyl Fumarate as Part of Combination Antiretroviral Therapy: Results From the ACTG A5175 PEARLS Study. J Infect Dis. 2017 Mar 15;215(6):907-910.
Full-text Article: http://scholars.fhcrc.org/11587/

Dang CH, Aubert M, De Silva Feelixge HS, Diem K, Loprieno MA, Roychoudhury P, Stone D, Jerome KR. In vivo dynamics of AAV-mediated gene delivery to sensory neurons of the trigeminal ganglia. Sci Rep. 2017 Apr 19;7(1):927.
Full-text Article: http://scholars.fhcrc.org/11526/

De Silva Feelixge HS, Jerome KR. Excision of Latent HIV-1 from Infected Cells In Vivo: An Important Step Forward. Mol Ther. 2017 May 3;25(5):1062-1064.
Full-text Article: http://scholars.fhcrc.org/11598/

Dudas G, Carvalho LM, Bedford T, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. 2017 Apr 20;544(7650):309-315.
Full-text Article: http://scholars.fhcrc.org/11479/

Eshleman SH, Wilson EA, Zhang XC, Ou S-S, Piwowar-Manning E, Eron JJ, McCauley M, Gamble T, Gallant JE, Hosseinipour MC, Kumarasamy N, Hakim JG, Kalonga B, Pilotto JH, Grinsztejn B, Godbole SV, Chotirosniramit N, Santos BR, Shava E, Mills LA, Panchia R, Mwelase N, Mayer KH, Chen YQ, Cohen MS, Fogel JM. Virologic outcomes in early antiretroviral treatment: HPTN 052. HIV Clin Trials. 2017 Apr 7:1-10.
Full-text Article: http://scholars.fhcrc.org/11464/

Feldstein LR, Rowhani-Rahbar A, Staples JE, Weaver MR, Halloran ME, Ellis EM. Persistent Arthralgia Associated with Chikungunya Virus Outbreak, US Virgin Islands, December 2014-February 2016. Emerg Infect Dis. 2017 Apr;23(4):673-676.
Full-text Article: http://scholars.fhcrc.org/11538/

Fisher CE, Bornstein R, Kuypers J, Jerome KR, Boeckh M, Limaye AP. Comparison of self-collected nasal swabs with oral washes for sequential viral load monitoring in lung transplant recipients with respiratory virus infection. J Clin Virol. 2017 Jun;91:49-51.
Full-text Article: http://scholars.fhcrc.org/11557/

Fogel JM, Piwowar-Manning E, Debevec B, Walsky T, Schlusser K, Laeyendecker O, Wilson EA, McCauley M, Gamble T, Tegha G, Biomed M, Soko D, Kumwenda J, Hosseinipour MC, Chen YQ, Cohen MS, Eshleman SH. Impact of early antiretroviral therapy on the performance of HIV rapid tests and HIV incidence assays. J Acquir Immune Defic Syndr. 2017 Apr 26.
Full-text Article: http://scholars.fhcrc.org/11566/

Goldman JD, Gallaher A, Jain R, Stednick Z, Menon M, Boeckh MJ, Pottinger PS, Schwartz SM, Casper C. Infusion-Compatible Antibiotic Formulations for Rapid Administration to Improve Outcomes in Cancer Outpatients With Severe Sepsis and Septic Shock: The Sepsis STAT Pack. J Natl Compr Canc Netw. 2017 Apr;15(4):457-464.
Full-text Article: http://scholars.fhcrc.org/11470/

Gravel A, Dubuc I, Wallaschek N, Gilbert-Girard S, Collin V, Hall-Sedlak R, Jerome KR, Mori Y, Carbonneau J, Boivin G, Kaufer BB, Flamand L. Cell culture systems to study Human Herpesvirus 6A/B Chromosomal Integration. J Virol. 2017 May 3. pii: JVI.00437-17.
Full-text Article: http://scholars.fhcrc.org/11567/

Hayes R, Floyd S, Schaap A, Shanaube K, Bock P, Sabapathy K, Griffith S, Donnell D, Piwowar-Manning E, El-Sadr W, Beyers N, Ayles H, Fidler S. A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial. PLoS Med. 2017 May 2;14(5):e1002292.
Full-text Article: http://scholars.fhcrc.org/11559/

Hood JE, Golden MR, Hughes JP, Goodreau SM, Siddiqi A-EA, Buskin SE, Hawes SE. Projected demographic composition of the United States population of people living with diagnosed HIV. AIDS Care. 2017 Apr 10:1-8.
Full-text Article: http://scholars.fhcrc.org/11491/

Lopez-Medina E, Melgar M, Gaensbauer JT, Bandyopadhyay AS, Borate BR, Weldon WC, Ruttimann R, Ward J, Clemens R, Asturias EJ. Inactivated polio vaccines from three different manufacturers have equivalent safety and immunogenicity when given as 1 or 2 additional doses after bivalent OPV: Results from a randomized controlled trial in Latin America. Vaccine. 2017 Jun 16;35(28):3591-3597.
Full-text Article: http://scholars.fhcrc.org/11591/

Lyons VH, Li L, Hughes JP, Rowhani-Rahbar A. Proposed Variations of the Stepped Wedge Design Can be Employed to Accommodate Multiple InterventionsJ Clin Epidemiol. 2017 Apr 13.
Full-text Article: http://scholars.fhcrc.org/11507/

Magaret AS, Wald A. Autism Link to Herpes Simplex Virus 2 Antibody in Pregnancy Likely To Be Spurious. mSphere. 2017 Mar 29;2(2).
Full-text Article: http://scholars.fhcrc.org/11475/

Miles FL, Goodman PJ, Tangen C, Torkko KC, Schenk JM, Song X, Pollak M, Thompson IM, Neuhouser ML. Interactions of the Insulin-Like Growth Factor Axis and Vitamin D in Prostate Cancer Risk in the Prostate Cancer Prevention Trial. Nutrients. 2017 Apr 12;9(4).
Full-text Article: http://scholars.fhcrc.org/11513/

Ott M, Jing L, Lorenzo L, Casanova J-L, Zhang S-Y, Koelle DM. T-Cell Responses to HSV-1 in Persons Who Have Survived Childhood Herpes Simplex Encephalitis. Pediatr Infect Dis J. 2017 May 3.
Full-text Article: http://scholars.fhcrc.org/11563/

Reeves DB, Peterson CW, Kiem H-P, Schiffer JT. Autologous stem-cell transplantation disrupts adaptive immune responses during rebound SHIV viremia. J Virol. 2017 Jun 9;91(13).
Full-text Article: http://scholars.fhcrc.org/11478/

Shah JA, Musvosvi M, Shey M, Horne DJ, Wells RD, Peterson GJ, Cox JS, Daya M, Hoal EG, Lin L, Gottardo R, Hanekom WA, Scriba TJ, Hatherill M, Hawn TR. A Functional TOLLIP Variant is Associated with BCG-Specific Immune Responses and Tuberculosis. Am J Respir Crit Care Med. 2017 May 2.
Full-text Article: http://scholars.fhcrc.org/11562/

Sharma M, Barnabas RV, Celum C. Community-based strategies to strengthen men's engagement in the HIV care cascade in sub-Saharan Africa. PLoS Med. 2017 Apr 11;14(4):e1002262.
Full-text Article: http://scholars.fhcrc.org/11497/

Song X, Huang Y, Neuhouser ML, Tinker LF, Vitolins MZ, Prentice RL, Lampe JW. Dietary long-chain fatty acids and carbohydrate biomarker evaluation in a controlled feeding study in participants from the Women's Health Initiative cohort. Am J Clin Nutr. 2017 Jun;105(6):1272-1282.
Full-text Article: http://scholars.fhcrc.org/11550/

Vagenas P, Brown S-E, Clark JL, Konda KA, Lama JR, Sanchez J, Duerr AC, Altice FL. A Qualitative Assessment of Alcohol Consumption and Sexual Risk Behaviors Among Men Who Have Sex With Men and Transgender Women in Peru. Subst Use Misuse. 2017 Jun 7;52(7):831-839.
Full-text Article: http://scholars.fhcrc.org/11523/

Waghmare A, Englund JA, Boeckh M. Parainfluenza Virus 3-specific T Cells: Opportunity for Intervention? J Infect Dis. 2017 May 2.
Full-text Article: http://scholars.fhcrc.org/11574/

Wang Y, Whittall T, Neil S, Britton G, Mistry M, Rerks-Ngarm S, Pitisuttithum P, Kaewkungwal J, Nitayaphan S, Yu X, Sato A, O'Connell RJ, Michael NL, Robb ML, Kim JH, Lehner T. A novel mechanism linking memory stem cells with innate immunity in protection against HIV-1 infection. Sci Rep. 2017 Apr 21;7(1):1057.
Full-text Article: http://scholars.fhcrc.org/11532/

Yang D, Keys B, Conti DJ, Foulke L, Stellrecht K, Cook L, Lopez-Soler RI. JC polyomavirus nephropathy,  a rare cause of transplant dysfunction: Case report and review of literature. Transpl Infect Dis. 2017 Apr;19(2).
Full-text Article: http://scholars.fhcrc.org/11554/

Zaman K, Sack DA, Neuzil KM, Yunus M, Moulton LH, Sugimoto JD, Fleming JA, Hossain I, Arifeen SE, Azim T, Rahman M, Lewis KDC, Feller AJ, Qadri F, Halloran ME, Cravioto A, Victor JC. Effectiveness of a live oral human rotavirus vaccine after programmatic introduction in Bangladesh: A cluster-randomized trial. PLoS Med. 2017 Apr 18;14(4):e1002282.
Full-text Article: http://scholars.fhcrc.org/11517/

Zhang Q, Sun K, Chinazzi M, Pastore Y Piontti A, Dean NE, Rojas DP, Merler S, Mistry D, Poletti P, Rossi L, Bray M, Halloran ME, Longini IM, Jr., Vespignani A. Spread of Zika virus in the Americas. Proc Natl Acad Sci U S A. 2017 May 30;114(22):E4334-E4343.
Full-text Article: http://scholars.fhcrc.org/11546/

Zhang Y, Clarke W, Marzinke MA, Piwowar-Manning E, Beauchamp G, Breaud A, Hendrix CW, Cloherty GA, Emel L, Rose S, Hightow-Weidman L, Siegel M, Shoptaw S, Fields SD, Wheeler D, Eshleman SH. Evaluation of a multi-drug assay for monitoring adherence to a regimen for HIV pre-exposure prophylaxis in a clinical study (HIV Prevention Trials Network 073). Antimicrob Agents Chemother. 2017 Apr 24. pii: AAC.02743-16.
Full-text Article: http://scholars.fhcrc.org/11540/

Zhou T, Doria-Rose NA, Cheng C, Stewart-Jones GBE, Chuang G-Y, Chambers M, Druz A, Geng H, McKee K, Kwon YD, O'Dell S, Sastry M, Schmidt SD, Xu K, Chen L, Chen RE, Louder MK, Pancera M, Wanninger TG, Zhang B, Zheng A, Farney SK, Foulds KE, Georgiev IS, Joyce MG, Lemmin T, Narpala S, Rawi R, Soto C, Todd J-P, Shen C-H, Tsybovsky Y, Yang Y, Zhao P, Haynes BF, Stamatatos L, Tiemeyer M, Wells L, Scorpio DG, Shapiro L, McDermott AB, Mascola JR, Kwong PD. Quantification of the Impact of the HIV-1-Glycan Shield on Antibody Elicitation. Cell Rep. 2017 Apr 25;19(4):719-732
Full-text Article: http://scholars.fhcrc.org/11548/

April

Adachi K, Xu J, Ank B, Watts DH, Mofenson LM, Pilotto JH, Joao E, Santos B, Fonseca R, Kreitchmann R, Pinto J, Mussi-Pinhata MM, Gray G, Theron G, Morgado MG, Bryson YJ, Veloso VG, Klausner JD, Moye J, Nielsen-Saines K. Cytomegalovirus Urinary Shedding in HIV-infected Pregnant Women and Congenital Cytomegalovirus Infection. Clin Infect Dis. 2017 Mar 22.
Full-text Article: http://scholars.fhcrc.org/11459/

Adamson B, Dimitrov D, Devine B, Barnabas R. The Potential Cost-Effectiveness of HIV Vaccines: A Systematic Review. Pharmacoeconom Open. 2017 Mar;1(1):1-12. PMC5373805.
Full-text Article: http://scholars.fhcrc.org/11454/

Baeten JM, Brown ER, Hillier SL. Dapivirine Vaginal Ring for HIV-1 Prevention REPLY. N Engl J Med. 2017 Mar 9;376(10):995-6.
Full-text Article: http://scholars.fhcrc.org/11387/

Balasenthil S, Huang Y, Liu S, Marsh T, Chen J, Stass SA, KuKuruga D, Brand R, Chen N, Frazier ML, Jack Lee J, Srivastava S, Sen S, McNeill Killary A. A Plasma Biomarker Panel to Identify Surgically Resectable Early-Stage Pancreatic Cancer. J Natl Cancer Inst. 2017 Aug 1;109(8).
Full-text Article: http://scholars.fhcrc.org/11436/

Bernstein DI, Wald A, Warren T, Fife K, Tyring S, Lee P, Van Wagoner N, Magaret A, Flechtner JB, Tasker S, Chan J, Morris A, Hetherington S. Therapeutic Vaccine for Genital Herpes Simplex Virus-2 Infection Findings from a Randomized Trial. J Infect Dis. 2017 Jan 30.
Full-text Article: http://scholars.fhcrc.org/11378/

Celum C, Hong T, Cent A, Donnell D, Morrow R, Baeten JM, Firnhaber C, Grinsztejn B, Hosseinipour MC, Lalloo U, Nyirenda M, Riviere C, Sanchez J, Santos B, Supparatpinyo K, Hakim J, Kumarasamy N, Campbell TB. HSV-2 acquisition among HIV-1 infected adults treated with tenofovir as part of combination antiretroviral therapy Results from the ACTG A5175 PEARLS study. J Infect Dis. 2017 Jan 30.
Full-text Article: http://scholars.fhcrc.org/11379/

Chen I, Zhang Y, Cummings V, Cloherty GA, Connor M, Beauchamp G, Griffith S, Rose S, Gallant J, Scott HM, Shoptaw S, Del Rio C, Kuo I, Mannheimer S, Tieu H-V, Hurt CB, Fields SD, Wheeler DP, Mayer KH, Koblin BA, Eshleman SH. Analysis of HIV Integrase Resistance in Black Men Who Have Sex with Men in the United States. AIDS Res Hum Retroviruses. 2017 Apr 6.
Full-text Article: http://scholars.fhcrc.org/11425/

Corey L, Gray GE. Preventing acquisition of HIV is the only path to an AIDS-free generation. Proc Natl Acad Sci U S A. 2017 Apr 11;114(15):3798-3800.
Full-text Article: http://scholars.fhcrc.org/11444/

Drake AL, Unger JA, Ronen K, Matemo D, Perrier T, DeRenzi B, Richardson BA, Kinuthia J, John-Stewart G. Evaluation of mHealth strategies to optimize adherence and efficacy of Option B+ prevention of mother-to-child HIV transmission Rationale, design and methods of a 3-armed randomized controlled trial. Contemp Clin Trials. 2017 Mar 14;57:44-50.
Full-text Article: http://scholars.fhcrc.org/11354/

Fisher CE, Knudsen JL, Lease ED, Jerome KR, Rakita RM, Boeckh M, Limaye AP. Risk Factors and Outcomes of Ganciclovir Resistant Cytomegalovirus Infection in Solid Organ Transplant Recipients. Clin Infect Dis. 2017 Mar 29.
Full-text Article: http://scholars.fhcrc.org/11458/

Fleming TR, DeMets DL, Roe MT, Wittes J, Calis KA, Vora AN, Meisel A, Bain RP, Konstam MA, Pencina MJ, Gordon DJ, Mahaffey KW, Hennekens CH, Neaton JD, Pearson GD, Andersson TL, Pfeffer MA, Ellenberg SS. Data monitoring committees: Promoting best practices to address emerging challenges. Clin Trials. 2017 Apr;14(2):115-123. PMC5380168.
Full-text Article: http://scholars.fhcrc.org/11443/

Greninger AL, Waghmare A, Adler A, Qin X, Crowley JL, Englund JA, Kuypers JM, Jerome KR, Zerr DM. Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention. J Pediatric Infect Dis Soc. 2017 Apr 4.
Full-text Article: http://scholars.fhcrc.org/11433/

Hertz T, Beatty PR, MacMillen Z, Killingbeck SS, Wang C, Harris E. Antibody Epitopes Identified in Critical Regions of Dengue Virus Nonstructural 1 Protein in Mouse Vaccination and Natural Human Infections. J Immunol. 2017 Apr 5.
Full-text Article: http://scholars.fhcrc.org/11428/

Huang Y, Zhang L, Ledgerwood J, Grunenberg N, Bailer R, Isaacs A, Seaton K, Mayer KH, Capparelli E, Corey L, Gilbert PB. Population pharmacokinetics analysis of VRC01, an HIV-1 broadly neutralizing monoclonal antibody, in healthy adults. MAbs. 2017 Apr 3:0.
Full-text Article: http://scholars.fhcrc.org/11456/

Kuypers J, Jerome KR. Applications of Digital PCR for Clinical Microbiology. J Clin Microbiol. 2017 Mar 15.
Full-text Article: http://scholars.fhcrc.org/11341/

Levy ME, Phillips G,  2nd, Magnus M, Kuo I, Beauchamp G, Emel L, Hucks-Ortiz C, Hamilton EL, Wilton L, Chen I, Mannheimer S, Tieu H-V, Scott H, Fields SD, Del Rio C, Shoptaw S, Mayer K. A Longitudinal Analysis of Treatment Optimism and HIV Acquisition and Transmission Risk Behaviors Among Black Men Who Have Sex with Men in HPTN 061. AIDS Behav. 2017 Mar 28.
Full-text Article: http://scholars.fhcrc.org/11411/

Mayer BT, Krantz EM, Swan D, Ferrenberg J, Simmons K, Selke S, Huang M-L, Casper C, Corey L, Wald A, Schiffer JT, Gantt S. Transient oral human cytomegalovirus infections indicate inefficient viral spread from very few initially infected cells. J Virol. 2017 Apr 5.
Full-text Article: http://scholars.fhcrc.org/11429/

Monk BJ, Brady MF, Aghajanian C, Lankes HA, Rizack T, Leach J, Fowler JM, Higgins R, Hanjani P, Morgan M, Edwards R, Bradley W, Kolevska T, Foukas P, Swisher E, Anderson KS, Gottardo R, Bryan JK, Newkirk M, Manjarrez KL, Mannel RS, Hershberg RM, Coukos G. A phase 2, randomized, double-blind, placebo- controlled study of chemo-immunotherapy combination using motolimod with pegylated liposomal doxorubicin in recurrent or persistent ovarian cancer a Gynecologic Oncology Group partners study. Ann Oncol. 2017 Feb 21.
Full-text Article: http://scholars.fhcrc.org/11374/

Ogimi C, Waghmare AA, Kuypers JM, Xie H, Yeung CC, Leisenring WM, Seo S, Choi S-M, Jerome KR, Englund JA, Boeckh M. Clinical Significance of Human Coronavirus in Bronchoalveolar Lavage Samples from Hematopoietic Cell Transplantation Recipients and Patients with Hematologic Malignancies. Clin Infect Dis. 2017 Feb 17.
Full-text Article: http://scholars.fhcrc.org/11384/

Sivay MV, Li M, Piwowar-Manning E, Zhang Y, Hudelson SE, Marzinke MA, Amico RK, Redd A, Hendrix CW, Anderson PL, Bokoch K, Gail-Bekker L, van Griensven F, Mannheimer S, Hughes JP, Grant R, Eshleman SH. Characterization of HIV seroconverters in a TDF/FTC PrEP study HPTN 067/ADAPT. J Acquir Immune Defic Syndr. 2017 Mar 22.
Full-text Article: http://scholars.fhcrc.org/11375/

March

Fisher CE, Hohl TM, Fan W, Storer BE, Levine DM, Zhao LP, Martin PJ, Warren EH, Boeckh M, Hansen JA. Validation of single nucleotide polymorphisms in invasive aspergillosis following hematopoietic cell transplantation. Blood. 2017 Mar 7.
Full-text Article: http://scholars.fhcrc.org/11307/

Hill JA, Mayer BT, Xie H, Leisenring WM, Huang ML, Stevens-Ayers T, Milano F, Delaney C, Sorror ML, Sandmaier BM, Nichols G, Zerr DM, Jerome KR, Schiffer JT, Boeckh M. The cumulative burden of double-stranded DNA virus detection after allogeneic HCT is associated with increased mortality. Blood. 2017 Feb 16.
Full-text Article: http://scholars.fhcrc.org/11227/

Janes HE, Cohen KW, Frahm N, De Rosa SC, Sanchez B, Hural J, Magaret CA, Karuna S, Bentley C, Gottardo R, Finak G, Grove D, Shen M, Graham BS, Koup RA, Mulligan MJ, Koblin B, Buchbinder SP, Keefer MC, Adams E, Anude C, Corey L, Sobieszczyk M, Hammer SM, Gilbert PB, McElrath MJ. Higher T cell responses induced by DNA/rAd5 HIV-1 preventive vaccine are associated with lower HIV-1 infection risk in an efficacy trial. J Infect Dis. 2017 Feb 12.
Full-text Article: http://scholars.fhcrc.org/11214/

Kim S, Huang Y. Combining biomarkers for classification with covariate adjustment. Stat Med. 2017 Mar 9.
Full-text Article: http://scholars.fhcrc.org/11313/

Kimball LE, Stevens-Ayers T, Green ML, Xie H, Flowers ME, Jerome KR, LeBlanc R, Dahlgren C, Nichols WG, Chemaly RF, Papanicolaou G, Boeckh M. A multicenter, longitudinal, interventional, double blind randomized clinical trial in hematopoietic cell transplant recipients residing in remote areas lessons learned from the late cytomegalovirus prevention trial. Contemp Clin Trials Commun. 2016 Dec 15;4:84-89. Full-text Article: http://scholars.fhcrc.org/11191/

Koelle DM, Norberg P, Fitzgibbon MP, Russell RM, Greninger AL, Huang M-L, Stensland L, Jing L, Magaret AS, Diem K, Selke S, Xie H, Celum C, Lingappa JR, Jerome KR, Wald A, Johnston C. Worldwide circulation of HSV-2 x HSV-1 recombinant strains. Sci Rep. 2017 Mar 13;7:44084.
Full-text Article: http://scholars.fhcrc.org/11328/

Makhsous N, Shean RC, Droppers D, Guan J, Jerome KR, Greninger AL. Genome Sequences of Three Novel Bunyaviruses, Two Novel Rhabdoviruses, and One Novel Nyamivirus from Washington State Moths. Genome Announc. 2017 Feb 16;5(7).
Full-text Article: http://scholars.fhcrc.org/11228/

McElrath MJ. Adjuvants tailoring humoral immune responses. Curr Opin HIV AIDS. 2017 Mar 2.
Full-text Article: http://scholars.fhcrc.org/11292/

Newman LP, Njoroge A, Magaret A, Chohan BH, Gitomea VW, Wald A, Gorstein J, Overbaugh J, Wamalwa D, Maleche-Obimbo E, Nduati R, Farquhar C. Sustained Responses to Measles Revaccination at 24 Months in HIV-Infected Children on Antiretroviral Therapy in Kenya. Pediatr Infect Dis J. 2017 Feb 13.
Full-text Article: http://scholars.fhcrc.org/11208/

Peterson CW, Benne C, Polacino P, Kaur J, McAllister CE, Filali-Mouhim A, Obenza W, Pecor TA, Huang ML, Baldessari A, Murnane RD, Woolfrey AE, Jerome KR, Hu SL, Klatt NR, DeRosa S, Sekaly RP, Kiem HP. Loss of immune homeostasis dictates SHIV rebound after stem-cell transplantation. JCI Insight. 2017 Feb 23;2(4):e91230.
Full-text Article: http://scholars.fhcrc.org/11274/

Saifee NH, Evans HL, Magaret AS, Hess JR, Delaney M, O'Keefe GE, Pham TN, Foy H, Bulger E, Pagano MB. Outcomes in necrotizing soft tissue infections treated with therapeutic plasma exchange. Transfusion. 2017 Mar 7.
Full-text Article: http://scholars.fhcrc.org/11300/

Seo S, Waghmare A, Scott EM, Xie H, Kuypers JM, Hackman RC, Campbell AP, Choi SM, Leisenring WM, Jerome KR, Englund JA, Boeckh M. Human rhinovirus detection in the lower respiratory tract of hematopoietic cell transplant recipients association with mortality. Haematologica. 2017 Feb 9.
Full-text Article: http://scholars.fhcrc.org/11190/

Shean RC, Makhsous N, Crawford RL, Jerome KR, Greninger AL. Draft Genome Sequences of Six Novel Picorna-Like Viruses from Washington State Spiders. Genome Announc. 2017 Mar 2;5(9).
Full-text Article: http://scholars.fhcrc.org/11289/

Zurawski G, Shen X, Zurawski S, Tomaras GD, Montefiori DC, Roederer M, Ferrari G, Lacabaratz C, Klucar P, Wang Z, Foulds KE, Kao SF, Yu X, Sato A, Yates NL, LaBranche C, Stanfield-Oakley S, Kibler K, Jacobs B, Salazar A, Self S, Fulp J, Gottardo R, Galmin L, Weiss D, Cristillo A, Pantaleo G, Levy Y. Superiority in Rhesus Macaques of Targeting HIV-1 Env Gp140 to CD40 Versus LOX-1 in Combination with Replication Competent NYVAC-KC for Induction of Env-Specific Antibody and T Cell Responses. J Virol. 2017 Feb 15.
Full-text Article: http://scholars.fhcrc.org/11213/

February

Aiyegbo MS, Shmelkov E, Dominguez L, Goger M, Battacharya S, deCamp AC, Gilbert PB, Berman PW, Cardozo T. Peptide Targeted by Human Antibodies Associated with HIV Vaccine-Associated Protection Assumes a Dynamic alpha-Helical Structure. PLoS One. 2017 Jan 20;12(1):e0170530.
Full-text Article: http://scholars.fhcrc.org/11094/

Bateman AC, Greninger AL, Atienza EE, Limaye AP, Jerome KR, Cook L. Quantification of BK Virus Standards by Quantitative Real-Time PCR and Droplet Digital PCR Is Confounded by Multiple Virus Populations in the WHO BKV International Standard. Clin Chem. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11061/

Boeckh M, Stevens-Ayers T, Travi G, Huang ML, Cheng GS, Xie H, Leisenring W, Erard V, Seo S, Kimball L, Corey L, Pergam SA, Jerome KR. Bronchoalveolar Lavage DNA Quantification in Cytomegalovirus Pneumonia after Hematopoietic Cell Transplantation. J Infect Dis. 2017 Feb 9. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11171/

Cagle A, McGrath C, Richardson BA, Donovan D, Sakr S, Yatich N, Ngomoa R, Chepngeno Langat A, John-Stewart G, Chung MH. Alcohol use and immune reconstitution among HIV-infected patients on antiretroviral therapy in Nairobi, Kenya. AIDS Care. 2017 Jan 29:1-6.
Full-text Article: http://scholars.fhcrc.org/11120/

Chirenje ZM, Gundacker HM, Richardson B, Rabe L, Gaffoor Z, Nair GL, Mirembe BG, Piper JM, Hillier S, Marrazzo J. Risk Factors for Incidence of Sexually Transmitted Infections Among Women in a Human Immunodeficiency Virus Chemoprevention Trial VOICE (MTN-003). Sex Transm Dis. 2017 Mar;44(3):135-140
Full-text Article: http://scholars.fhcrc.org/11170/

Cohen KW, Frahm N. Current views on the potential for development of a HIV vaccine. Expert Opin Biol Ther. 2017 Mar;17(3):295-303.
Full-text Article: http://scholars.fhcrc.org/11041/

Cybis GB, Sinsheimer JS, Bedford T, Rambaut A, Lemey P, Suchard MA. Bayesian nonparametric clustering in phylogenetics modeling antigenic evolution in influenza. Stat Med. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11057/

Da Costa A, Garza E, Graham JB, Swarts JL, Soerens AG, Gale M, Lund JM. Extrinsic MAVS signaling is critical for Treg maintenance of Foxp3 expression following acute flavivirus infection. Sci Rep. 2017 Jan 17;7:40720.
Full-text Article: http://scholars.fhcrc.org/11038/

Fajgenbaum DC, Uldrick TS, Bagg A, Frank D, Wu D, Srkalovic G, Simpson D, Liu AY, Menke D, Chandrakasan S, Lechowicz MJ, Wong RS, Pierson S, Paessler M, Rossi JF, Ide M, Ruth J, Croglio M, Suarez A, Krymskaya V, Chadburn A, Colleoni G, Nasta S, Jayanthan R, Nabel CS, Casper C, Dispenzieri A, Fossa A, Kelleher D, Kurzrock R, Voorhees P, Dogan A, Yoshizaki K, van Rhee F, Oksenhendler E, Jaffe ES, Elenitoba-Johnson KS, Lim MS. International, evidence-based consensus diagnostic criteria for HHV-8-negative/idiopathic multicentric Castleman disease. Blood. 2017 Jan 13. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11028/

Fleming TR, DeMets DL, Roe MT, Wittes J, Calis KA, Vora AN, Meisel A, Bain RP, Konstam MA, Pencina MJ, Gordon DJ, Mahaffey KW, Hennekens CH, Neaton JD, Pearson GD, Andersson TL, Pfeffer MA, Ellenberg SS. Rejoinder. Clin Trials. 2017 Jan 1:1740774516688917.
Full-text Article: http://scholars.fhcrc.org/11128/

Garcia-Arriaza J, Perdiguero B, Heeney JL, Seaman MS, Montefiori DC, Yates NL, Tomaras GD, Ferrari G, Foulds KE, Roederer M, Self SG, Borate B, Gottardo R, Phogat S, Tartaglia J, Barnett SW, Burke B, Cristillo AD, Weiss DE, Lee C, Kibler KV, Jacobs BL, Wagner R, Ding S, Pantaleo G, Esteban M. HIV/AIDS vaccine candidates based on replication-competent recombinant poxvirus NYVAC-C-KC expressing trimeric gp140 and Gag-derived VLPs or lacking the viral molecule B19 that inhibits type I interferon activate relevant HIV-1-specific B and T cell immune functions in non-human primates. J Virol. 2017 Feb 8. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11172/

Goyette MS, Wilson KS, Deya R, Masese LN, Shafi J, Richardson BA, Mandaliya K, Jaoko W, McClelland RS. Association between menopause and unprotected sex in high-risk HIV-positive women in Mombasa, Kenya. J Acquir Immune Defic Syndr. 2016 Dec 30. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11009/

Halloran ME, Hudgens MG. Dependent Happenings A Recent Methodological Review. Curr Epidemiol Rep. 2016 Dec;3(4):297-305.
Full-text Article: http://scholars.fhcrc.org/11123/

Huang Y, Zhang L, Janes H, Frahm N, Isaacs A, Kim JH, Montefiori D, McElrath MJ, Tomaras GD, Gilbert PB. Predictors of durable immune responses six months after the last vaccination in preventive HIV vaccine trials. Vaccine. 2017 Feb 22;35(8):1184-1193.
Full-text Article: http://scholars.fhcrc.org/11117/

Kerr KF, Brown M, Janes H. Reply to A.J. Vickers et al. J Clin Oncol. 2017 Feb;35(4):473-475.
Full-text Article: http://scholars.fhcrc.org/11115/

Khosropour CM, Dombrowski JC, Hughes JP, Manhart LE, Simoni JM, Golden MR. Operationalizing the Measurement of Seroadaptive Behaviors A Comparison of Reported Sexual Behaviors and Purposely-Adopted Behaviors Among Men who have Sex with Men (MSM) in Seattle. AIDS Behav. 2017 Jan 17. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11048/

LaCourse SM, Cranmer LM, Matemo D, Kinuthia J, Richardson BA, Horne DJ, John-Stewart G. Effect of pregnancy on interferon gamma release-assay and tuberculin skin test detection of latent TB infection among HIV-infected women in a high burden setting. J Acquir Immune Defic Syndr. 2017 Jan 30. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11134/

Looker KJ, Magaret AS, May MT, Turner KM, Vickerman P, Newman LM, Gottlieb SL. First estimates of the global and regional incidence of neonatal herpes infection. Lancet Glob Health. 2017 Mar;5(3):e300-e309.
Full-text Article: http://scholars.fhcrc.org/11152/

Lovelace ES, Maurice NJ, Miller HW, Slichter CK, Harrington R, Magaret A, Prlic M, De Rosa S, Polyak SJ. Silymarin suppresses basal and stimulus-induced activation, exhaustion, differentiation, and inflammatory markers in primary human immune cells. PLoS One. 2017 Feb 3;12(2):e0171139.
Full-text Article: http://scholars.fhcrc.org/11156/

Luedtke AR, van der Laan MJ. Personalized Dose Finding Using Outcome Weighted Learning Comment. Journal of the American Statistical Association. 2016;111(516): 1526-1530.
Full-text Article: http://scholars.fhcrc.org/11179/

Lund JM, Broliden K, Pyra MN, Thomas KK, Donnell D, Irungu E, Muwonge TR, Mugo N, Manohar M, Jansson M, Mackelprang R, Marzinke MA, Baeten JM, Lingappa JR. Correction for Lund et al., HIV-1-Neutralizing IgA Detected in Genital Secretions of Highly HIV-1-Exposed Seronegative Women on Oral Preexposure Prophylaxis. J Virol. 2017 Jan 18;91(3).
Full-text Article: http://scholars.fhcrc.org/11068/

Mazengia E, Kawakami V, Rietberg K, Kay M, Wyman P, Skilton C, Aberra A, Boonyaratanakornkit J, Limaye AP, Pergam SA, Whimbey E, Olsen-Scribner RJ, Duchin JS. Hospital-acquired listeriosis linked to a persistently contaminated milkshake machine. Epidemiol Infect. 2017 Jan 9:1-7.
Full-text Article: http://scholars.fhcrc.org/11006/

Miller NJ, Church CD, Dong L, Crispin D, Fitzgibbon MP, Lachance K, Jing L, Shinohara M, Gavvovidis I, Willimsky G, McIntosh M, Blankenstein T, Koelle DM, Nghiem P. Tumor-Infiltrating Merkel Cell Polyomavirus-Specific T Cells Are Diverse and Associated with Improved Patient Survival. Cancer Immunol Res. 2017 Feb;5(2):137-147.
Full-text Article: http://scholars.fhcrc.org/11036/

Okuku F, Krantz EM, Kafeero J, Kamya MR, Orem J, Casper C, Phipps W. Evaluation of a predictive staging model for HIV-associated Kaposi sarcoma in Uganda. J Acquir Immune Defic Syndr. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11097/

Seremba E, Ssempijja V, Kalibbala S, Gray RH, Wawer MJ, Nalugoda F, Casper C, Phipps WT, Ocama P, Serwadda D, Thomas DL, Reynolds S. Hepatitis B incidence and prevention with antiretroviral therapy among HIV positive individuals in Rakai, Uganda. AIDS. 2017 Jan 17. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11060/

Stamatatos L, Pancera M, McGuire AT. Germline-targeting immunogens. Immunol Rev. 2017 Jan;275(1):203-216.
Full-text Article: http://scholars.fhcrc.org/11125/   

Wandell GM, Molina Y, Sanchez H, Greer AC, Rios J, Bain C, Segura P, Lama JR, Sanchez J, Duerr A. Knowledge and preferences concerning acute HIV testing programs among both Peruvian men who have sex with men and transgender women. Int J STD AIDS. 2017 Jan 1:956462416685674.
Full-text Article: http://scholars.fhcrc.org/11014/   

Wood DT, Kojouharov HV, Dimitrov DT. Universal approaches to approximate biological systems with nonstandard finite difference methods. Mathematics and Computers in Simulation. 2017;133:337-350.
Full-text Article: http://scholars.fhcrc.org/11049/  

Yanez ND, Aljasser I, Andre M, Hu CC, Juraska M, Lumley T. Assessing the impact of measurement error in modeling change in the absence of auxiliary data. Communications in Statistics-Theory and Methods. 2017;46(6):2667-2680.
Full-text Article: http://scholars.fhcrc.org/11019/  

Zhao W, Chen YQ, Hsu L. On estimation of time-dependent attributable fraction from population-based case-control studies. Biometrics. 2017 Jan 18. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/11063/  

January

Astronomo RD, Santra S, Ballweber-Fleming L, Westerberg KG, Mach L, Hensley-McBain T, Sutherland L, Mildenberg B, Morton G, Yates NL, Mize GJ, Pollara J, Hladik F, Ochsenbauer C, Denny TN, Warrier R, Rerks-Ngarm S, Pitisuttithum P, Nitayapan S, Kaewkungwal J, Ferrari G, Shaw GM, Xia SM, Liao HX, Montefiori DC, Tomaras GD, Haynes BF, McElrath M Juliana. Neutralization Takes Precedence Over IgG or IgA Isotype-related Functions in Mucosal HIV-1 Antibody-mediated Protection. EBioMedicine. 2016 Dec;14:97-111.
Full-text Article: http://scholars.fhcrc.org/10851/

Bajema KL, Dalesandro MF, Fredricks DN, Ramchandani M. Disseminated coccidioidomycosis presenting with intramedullary spinal cord abscesses Management challenges. Med Mycol Case Rep. 2016 Dec 2;15:1-4.
Full-text Article: http://scholars.fhcrc.org/10972/

Chen I, Chau G, Wang J, Clarke W, Marzinke MA, Cummings V, Breaud A, Laeyendecker O, Fields SD, Griffith S, Scott HM, Shoptaw S, Del Rio C, Magnus M, Mannheimer S, Tieu HV, Wheeler DP, Mayer KH, Koblin BA, Eshleman SH.  Analysis of HIV Diversity in HIV-Infected Black Men Who Have Sex with Men (HPTN 061). PLoS One. 2016 Dec 9;11(12):e0167629
Full-text Article: http://scholars.fhcrc.org/10876/

Cranston RD, Lama JR, Richardson BA, Carballo-Dieguez A, Kunjara Na Ayudhya RP, Liu K, Patterson KB, Leu CS, Galaska B, Jacobson CE, Parikh UM, Marzinke MA, Hendrix CW, Johnson S, Piper JM, Grossman C, Ho KS, Lucas J, Pickett J, Bekker LG, Chariyalertsak S, Chitwarakorn A, Gonzales P, Holtz TH, Liu AY, Mayer KH, Zorrilla C, Schwartz JL, Rooney J, McGowan I. MTN-017 A Rectal Phase 2 Extended Safety and Acceptability Study of Tenofovir Reduced-Glycerin 1% Gel. Clin Infect Dis. 2016 Dec 16. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10910/

Golden MR, Hughes JP, Dombrowski JC. Optimizing the Timing of HIV Screening as Part of Routine Medical Care. AIDS Patient Care STDS. 2017 Jan;31(1):27-32.
Full-text Article: http://scholars.fhcrc.org/10988/

Greninger AL, Bateman AC, Atienza EE, Wendt S, Makhsous N, Jerome KR, Cook L. Copy number heterogeneity of JC virus standards. J Clin Microbiol. 2016 Dec 14. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10889/

Kublin JG, Mikolajczak SA, Sack BK, Fishbaugher ME, Seilie A, Shelton L, VonGoedert T, Firat M, Magee S, Fritzen E, Betz W, Kain HS, Dankwa DA, Steel RW, Vaughan AM, Noah Sather D, Murphy SC, Kappe SH. Complete attenuation of genetically engineered Plasmodium falciparum sporozoites in human subjects. Sci Transl Med. 2017 Jan 4;9(371).
Full-text Article: http://scholars.fhcrc.org/10984/

Lampe JW, Huang Y, Neuhouser ML, Tinker LF, Song X, Schoeller DA, Kim S, Raftery D, Di C, Zheng C, Schwarz Y, Van Horn L, Thomson CA, Mossavar-Rahmani Y, Beresford SA, Prentice RL. Dietary biomarker evaluation in a controlled feeding study in women from the Women's Health Initiative cohort. Am J Clin Nutr. 2017 Feb;105(2):466-475.
Full-text Article: http://scholars.fhcrc.org/10944/

Maziarz RT, Brazauskas R, Chen M, McLeod AA, Martino R, Wingard JR, Aljurf M, Battiwalla M, Dvorak CC, Geroge B, Guinan EC, Hale GA, Lazarus HM, Lee JW, Liesveld JL, Ramanathan M, Reddy V, Savani BN, Smith FO, Strasfeld L, Taplitz RA, Ustun C, Boeckh MJ, Gea-Banacloche J, Lindemans CA, Auletta JJ, Riches ML. Pre-existing invasive fungal infection is not a contraindication for allogeneic HSCT for patients with hematologic malignancies a CIBMTR study. Bone Marrow Transplant. 2017 Feb;52(2):270-278.
Full-text Article: http://scholars.fhcrc.org/10922/

Posavad CM, Zhao L, Dong L, Jin L, Stevens CE, Magaret AS, Johnston C, Wald A, Zhu J, Corey L, Koelle DM. Enrichment of herpes simplex virus type 2 (HSV-2) reactive mucosal T cells in the human female genital tract. Mucosal Immunol. 2017 Jan 4. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10977/

Qi L, Sun Y, Gilbert PB. Generalized semiparametric varying-coefficient model for longitudinal data with applications to adaptive treatment randomizations. Biometrics. 2016 Dec 5. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10848/

Sahoo F, Hill JA, Xie H, Leisenring W, Yi J, Goyal S, Kimball LE, Lee I, Seo S, Davis C, Pergam SA, Flowers ME, Liaw KL, Holmberg L, Boeckh M. Herpes Zoster in Autologous Hematopoietic Cell Transplant Recipients in the Era of Acyclovir or Valacyclovir Prophylaxis and Novel Treatment and Maintenance Therapies. Biol Blood Marrow Transplant. 2017 Mar;23(3):505-511.
Full-text Article: http://scholars.fhcrc.org/10966/

Wald A, Timmler B, Magaret A, Warren T, Tyring S, Johnston C, Fife K, Selke S, Huang ML, Stobernack HP, Zimmermann H, Corey L, Birkmann A, Ruebsamen-Schaeff H. Effect of Pritelivir Compared With Valacyclovir on Genital HSV-2 Shedding in Patients With Frequent Recurrences A Randomized Clinical Trial. JAMA. 2016 Dec 20;316(23):2495-2503.
Full-text Article: http://scholars.fhcrc.org/10931/

Wald A. Hermeneutics of Herpes The American Sexually Transmitted Diseases Association Distinguished Career Award Lecture. Sex Transm Dis. 2017 Jan;44(1):1-5.
Full-text Article: http://scholars.fhcrc.org/10868/

Xi LF, Schiffman M, Ke Y, Hughes JP, Galloway DA, He Z, Hulbert A, Winer RL, Koutsky LA, Kiviat NB. Type-Dependent Association between Risk of Cervical Intraepithelial Neoplasia and Viral Load of Oncogenic Human Papillomavirus Types Other than Types 16 and 18. Int J Cancer. 2017 Jan 4. [Epub ahead of print]
Full-text Article: http://scholars.fhcrc.org/10986/


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