Vaccine and Infectious Disease Division

Recent Publications

Print outs of scientific publications

2016

March

Aghaeepour N,Chattopadhyay P,Chikina M,Dhaene T,Van Gassen S,Kursa M,Lambrecht BN,Malek M,McLachlan GJ,Qian Y,Qiu P,Saeys Y,Stanton R,Tong D,Vens C,Walkowiak S,Wang K,Finak G,Gottardo R,Mosmann T,Nolan GP,Scheuermann RH,Brinkman RR. (2016). A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry Part A, 89A(1), 16-21.
Full-text Article: http://scholars.fhcrc.org/8147/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26447924/?otool=fhcrclib

Asbach B,Kliche A,Kostler J,Perdiguero B,Esteban M,Jacobs BL,Montefiori DC,LaBranche CC,Yates NL,Tomaras GD,Ferrari G,Foulds KE,Roederer M,Landucci G,Forthal DN,Seaman MS,Hawkins N,Self SG,Sato A,Gottardo R,Phogat S,Tartaglia J,Barnett SW,Burke B,Cristillo AD,Weiss DE,Francis J,Galmin L,Ding S,Heeney JL,Pantaleo G,Wagner R. (2016). Streamlining Heterologous DNA-Prime and NYVAC/Protein-Boost HIV Vaccine Regimens in Rhesus Macaques by Employing Improved Antigens. J Virol.
Full-text Article: http://scholars.fhcrc.org/8853/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26865719/?otool=fhcrclib

Baeten JM,Palanee-Phillips T,Brown ER,Schwartz K,Soto-Torres LE,Govender V,Mgodi NM,Matovu Kiweewa F,Nair G,Mhlanga F,Siva S,Bekker LG,Jeenarain N,Gaffoor Z,Martinson F,Makanani B,Pather A,Naidoo L,Husnik M,Richardson BA,Parikh UM,Mellors JW,Marzinke MA,Hendrix CW,van der Straten A,Ramjee G,Chirenje ZM,Nakabiito C,Taha TE,Jones J,Mayo A,Scheckter R,Berthiaume J,Livant E,Jacobson C,Ndase P,White R,Patterson K,Germuga D,Galaska B,Bunge K,Singh D,Szydlo DW,Montgomery ET,Mensch BS,Torjesen K,Grossman CI,Chakhtoura N,Nel A,Rosenberg Z,McGowan I,Hillier S. (2016). Use of a Vaginal Ring Containing Dapivirine for HIV-1 Prevention in Women. N Engl J Med.
Full-text Article: http://scholars.fhcrc.org/8960/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26900902/?otool=fhcrclib

Balkus JE,Brown E,Palanee T,Nair G,Gafoor Z,Zhang J,Richardson BA,Chirenje ZM,Marrazzo JM,Baeten JM. (2016). An Empiric HIV Risk Scoring Tool to Predict HIV-1 Acquisition in African Women. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8942/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26918545/?otool=fhcrclib

Balkus JE,Manhart LE,Lee J,Anzala O,Kimani J,Schwebke J,Shafi J,Rivers C,Kabare E,McClelland RS. (2016). Periodic presumptive treatment for vaginal infections may reduce the incidence of bacterial sexually transmitted infections. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8966/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908758/?otool=fhcrclib

Bender Ignacio RA,Goldman JD,Magaret AS,Selke S,Huang ML,Gantt S,Johnston C,Phipps WT,Schiffer JT,Zuckerman RA,McClelland RS,Celum C,Corey L,Wald A,Casper C. (2016). Patterns of human herpesvirus-8 oral shedding among diverse cohorts of human herpesvirus-8 seropositive persons. Infect Agent Cancer, 11, 7. PMCID: PMC4748452.
Full-text Article: http://scholars.fhcrc.org/8854/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26865856/?otool=fhcrclib

Boeckh M,Gilbert PB. (2016). Search continues for a CMV vaccine for transplant recipients. Lancet Haematol, 3(2), e58-9.
Full-text Article: http://scholars.fhcrc.org/8855/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26853642/?otool=fhcrclib

Bosire R,Betz B,Aluisio A,Hughes JP,Nduati R,Kiarie J,Chohan BH,Merkel M,Lohman-Payne B,John-Stewart G,Farquhar C. (2016). High Rates of Exclusive Breastfeeding in Both Arms of a Peer Counseling Study Promoting EBF Among HIV-Infected Kenyan Women. Breastfeed Med.
Full-text Article: http://scholars.fhcrc.org/8903/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26885769/?otool=fhcrclib

Coley RY,Brown ER. (2016). Estimating effectiveness in HIV prevention trials with a Bayesian hierarchical compound Poisson frailty model. Stat Med.
Full-text Article: http://scholars.fhcrc.org/8873/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26869051/?otool=fhcrclib

Dean NE,Halloran ME,Yang Y,Longini IM. (2016). The transmissibility and pathogenicity of Ebola virus: a systematic review and meta-analysis of household secondary attack rate and asymptomatic infection. Clin Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8991/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26932131/?otool=fhcrclib

Dimitrov DT,BR MA,Donnell D. (2016). PrEP adherence patterns strongly impact individual HIV risk and observed efficacy in randomized clinical trials. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/9190/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26990823/?otool=fhcrclib

Dimitrov DT,Kiem HP,Jerome KR,Johnston C,Schiffer JT. (2016). A curative regimen would decrease HIV prevalence but not HIV incidence unless targeted to an ART-naive population. Sci Rep, 6, 22183.
Full-text Article: http://scholars.fhcrc.org/8950/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908162/?otool=fhcrclib

Finak G,Langweiler M,Jaimes M,Malek M,Taghiyar J,Korin Y,Raddassi K,Devine L,Obermoser G,Pekalski ML,Pontikos N,Diaz A,Heck S,Villanova F,Terrazzini N,Kern F,Qian Y,Stanton R,Wang K,Brandes A,Ramey J,Aghaeepour N,Mosmann T,Scheuermann RH,Reed E,Palucka K,Pascual V,Blomberg BB,Nestle F,Nussenblatt RB,Brinkman RR,Gottardo R,Maecker H,McCoy JP. (2016). Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium. Sci Rep, 6, 20686.
Full-text Article: http://scholars.fhcrc.org/8868/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26861911/?otool=fhcrclib

Fiore-Gartland A,Manso BA,Friedrich DP,Gabriel EE,Finak G,Moodie Z,Hertz T,De Rosa SC,Frahm N,Gilbert PB,McElrath MJ. (2016). Pooled-Peptide Epitope Mapping Strategies Are Efficient and Highly Sensitive: An Evaluation of Methods for Identifying Human T Cell Epitope Specificities in Large-Scale HIV Vaccine Efficacy Trials. PLoS One, 11(2), e0147812.
Full-text Article: http://scholars.fhcrc.org/8870/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26863315/?otool=fhcrclib

Fogel JM,Hudelson SE,Ou SS,Hart S,Wallis C,Morgado MG,Saravanan S,Tripathy S,Hovind L,Piwowar-Manning E,Sabin D,McCauley M,Gamble T,Zhang XC,Eron JJ,Gallant JE,Kumwenda J,Makhema J,Kumarasamy N,Chariyalertsak S,Hakim J,Badal-Faesen S,Akelo V,Hosseinipour MC,Santos BR,Godbole SV,Pilotto JH,Grinsztejn B,Panchia R,Mayer KH,Chen YQ,Cohen MS,Eshleman SH. (2016). HIV drug resistance in adults failing early antiretroviral treatment: results from the HIV Prevention Trials Network 052 trial. J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8863/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26859828/?otool=fhcrclib

Fu P,Hughes J,Zeng G,Hanook S,Orem J,Mwanda OW,Remick SC. (2016). A comparative investigation of methods for longitudinal data with limits of detection through a case study. Statistical Methods in Medical Research, 25(1), 153-166.
Full-text Article: http://scholars.fhcrc.org/9074/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/22504231/?otool=fhcrclib

Gantt S,Orem J,Krantz EM,Morrow RA,Selke S,Huang ML,Schiffer JT,Jerome KR,Nakaganda A,Wald A,Casper C,Corey L. (2016). Prospective characterization of the risk factors for transmission and symptoms of primary human herpesvirus infections among Ugandan infants. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/8936/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26917575/?otool=fhcrclib

Ghassemieh BJ,Attia EF,Koelle DM,Mancuso JD,Narita M,Horne DJ. (2016). Latent Tuberculosis Infection Test Agreement in the National Health and Nutrition Examination Survey. Am J Respir Crit Care Med.
Full-text Article: http://scholars.fhcrc.org/8911/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26890477/?otool=fhcrclib

Gray GE,Laher F,Doherty T,Abdool Karim S,Hammer S,Mascola J,Beyrer C,Corey L. (2016). Which New Health Technologies Do We Need to Achieve an End to HIV/AIDS?. PLoS Biol, 14(3), e1002372.
Full-text Article: http://scholars.fhcrc.org/8979/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26933962/?otool=fhcrclib

Gray GE,Laher F,Lazarus E,Ensoli B,Corey L. (2016). Approaches to preventative and therapeutic HIV vaccines. Curr Opin Virol, 17, 104-109.
Full-text Article: http://scholars.fhcrc.org/9197/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26985884/?otool=fhcrclib

Green ML,Leisenring W,Xie H,Mast TC,Cui Y,Sandmaier BM,orror ML,Goyal S,Ozkok S,Yi J,Sahoo F,Kimball LE,Jerome KR,Marks MA,Boeckh M. (2016). Cytomegalovirus viral load and mortality after haemopoietic stem cell transplantation in the era of pre-emptive therapy: a retrospective cohort study. Lancet Haematol, 3(3), e119-27.
Full-text Article: http://scholars.fhcrc.org/9084/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26947200/?otool=fhcrclib

Green RR,Wilkins C,Pattabhi S,Dong R,Loo Y,Gale M, Jr.. (2016). Transcriptional analysis of antiviral small molecule therapeutics as agonists of the RLR pathway. Genom Data, 7, 290-2. PMCID: PMC4778670.
Full-text Article: http://scholars.fhcrc.org/9198/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26981429/?otool=fhcrclib

Greninger AL,Jerome KR. (2016). Draft Genome Sequence of Goose Dicistrovirus. Genome Announc, 4(2).
Full-text Article: http://scholars.fhcrc.org/8983/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26941149/?otool=fhcrclib

Hall Sedlak R,Hill JA,Nguyen T,Cho M,Levin G,Cook L,Huang ML,Flamand L,Zerr DM,Boeckh M,Jerome KR. (2016). Detection of HHV-6B reactivation in hematopoietic cell transplant recipients with inherited chromosomally integrated HHV-6A by droplet digital PCR. J Clin Microbiol.
Full-text Article: http://scholars.fhcrc.org/8907/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26888901/?otool=fhcrclib

Havenar-Daughton C,Lindqvist M,Heit A,Wu JE,Reiss SM,Kendric K,Belanger S,Kasturi SP,Landais E,Akondy RS,McGuire HM,Bothwell M,Vagefi PA,Scully E,Tomaras GD,Davis MM,Poignard P,Ahmed R,Walker BD,Pulendran B,McElrath MJ,Kaufmann DE,Crotty S. (2016). CXCL13 is a plasma biomarker of germinal center activity. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/8968/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26908875/?otool=fhcrclib

Heddle NM,Boeckh M,Grossman B,Jacobson J,Kleinman S,Tobian AA,Webert K,Wong EC,Roback JD. (2016). AABB Committee Report: reducing transfusion-transmitted cytomegalovirus infections. Transfusion.
Full-text Article: http://scholars.fhcrc.org/9088/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26968400/?otool=fhcrclib

Hessell AJ,Malherbe DC,Pissani F,McBurney S,Krebs SJ,Gomes M,Pandey S,Sutton WF,Burwitz BJ,Gray M,Robins H,Park BS,Sacha JB,LaBranche CC,Fuller DH,Montefiori DC,Stamatatos L,Sather DN,Haigwood NL. (2016). Achieving Potent Autologous Neutralizing Antibody Responses against Tier 2 HIV-1 Viruses by Strategic Selection of Envelope Immunogens. J Immunol.
Full-text Article: http://scholars.fhcrc.org/8984/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26944928/?otool=fhcrclib

Hill JA,HallSedlak R,Magaret A,Huang ML,Zerr DM,Jerome KR,Boeckh M. (2016). Efficient identification of inherited chromosomally integrated human herpesvirus 6 using specimen pooling. J Clin Virol, 77, 71-76.
Full-text Article: http://scholars.fhcrc.org/8947/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26921738/?otool=fhcrclib

Huang Y. (2016). Evaluating and comparing biomarkers with respect to the area under the receiver operating characteristics curve in two-phase case-control studies. Biostatistics.
Full-text Article: http://scholars.fhcrc.org/8899/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26883772/?otool=fhcrclib

Johnston C,Gottlieb SL,Wald A. (2016). Status of vaccine research and development of vaccines for herpes simplex virus prepared for WHO PD-VAC. Vaccine.
Full-text Article: http://scholars.fhcrc.org/9201/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26973067/?otool=fhcrclib

Karcher MD,Palacios JA,Bedford T,Suchard MA,Minin VN. (2016). Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. PLoS Comput Biol, 12(3), e1004789.
Full-text Article: http://scholars.fhcrc.org/8982/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26938243/?otool=fhcrclib

Khosropour CM,Dombrowski JC,Swanson F,Kerani RP,Katz DA,Barbee LA,Hughes JP,Manhart LE,Golden MR. (2016). Trends in serosorting and the association with HIV/STI risk over time among men who have sex with men (MSM). J Acquir Immune Defic Syndr.
Full-text Article: http://scholars.fhcrc.org/8904/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26885806/?otool=fhcrclib

Kohrt HE,Tumeh PC,Benson D,Bhardwaj N,Brody J,Formenti S,Fox BA,Galon J,June CH,Kalos M,Kirsch I,Kleen T,Kroemer G,Lanier L,Levy R,Lyerly HK,Maecker H,Marabelle A,Melenhorst J,Miller J,Melero I,Odunsi K,Palucka K,Peoples G,Ribas A,Robins H,Robinson W,Serafini T,Sondel P,Vivier E,Weber J,Wolchok J,Zitvogel L,Disis ML,Cheever MA. (2016). Immunodynamics: a cancer immunotherapy trials network review of immune monitoring in immuno-oncology clinical trials. J Immunother Cancer, 4, 15. PMCID: PMC4791805.
Full-text Article: http://scholars.fhcrc.org/9204/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26981245/?otool=fhcrclib

Leitman EM,Hurst J,Mori M,Kublin J,Ndung'u T,Walker BD,Carlson J,Gray GE,Matthews PC,Frahm N,Goulder PJ. (2016). Lower Viral Loads and Slower CD4 Decline in MRKAd5 HIV-1 Vaccinees Expressing Disease-Susceptible HLA-B*58:02. J Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9090/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26951820/?otool=fhcrclib

Marty FM,Ostrosky-Zeichner L,Cornely OA,Mullane KM,Perfect JR,Thompson GR, 3rd,Alangaden GJ,Brown JM,Fredricks DN,Heinz WJ,Herbrecht R,Klimko N,Klyasova G,Maertens JA,Melinkeri SR,Oren I,Pappas PG,Racil Z,Rahav G,Santos R,Schwartz S,Vehreschild JJ,Young JH,Chetchotisakd P,Jaruratanasirikul S,Kanj SS,Engelhardt M,Kaufhold A,Ito M,Lee M,Sasse C,Maher RM,Zeiher B,Vehreschild MJ. (2016). Isavuconazole treatment for mucormycosis: a single-arm open-label trial and case-control analysis. Lancet Infect Dis.
Full-text Article: http://scholars.fhcrc.org/9093/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26969258/?otool=fhcrclib

McGuire AT,Gray MD,Dosenovic P,Gitlin AD,Freund NT,Petersen J,Correnti C,Johnsen W,Kegel R,Stuart AB,Glenn J,Seaman MS,Schief WR,Strong RK,Nussenzweig MC,Stamatatos L. (2016). Specifically modified Env immunogens activate B-cell precursors of broadly neutralizing HIV-1 antibodies in transgenic mice. Nat Commun, 7, 10618.
Full-text Article: http://scholars.fhcrc.org/8948/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26907590/?otool=fhcrclib

Menon MP,Njau JD,McFarland DA. (2016). Cost and Predictors of Care-Seeking Behaviors among Caregivers of Febrile Children-Uganda, 2009. Am J Trop Med Hyg.
Full-text Article: http://scholars.fhcrc.org/8898/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26880780/?otool=fhcrclib

Mensch BS,Brown ER,Liu K,Marrazzo J,Chirenje ZM,Gomez K,Piper J,Patterson K,van der Straten A. (2016). Reporting of Adherence in the VOICE Trial: Did Disclosure of Product Nonuse Increase at the Termination Visit?. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8932/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26906023/?otool=fhcrclib

Mirembe BG,Kelly CW,Mgodi N,Greenspan S,Dai JY,Mayo A,Piper J,Akello CA,Kiweewa FM,Magure T,Nakabiito C,Marrazzo JM,Chirenje ZM,Riddler SA. (2016). Bone Mineral Density Changes Among Young, Healthy African Women Receiving Oral Tenofovir for HIV Preexposure Prophylaxis. J Acquir Immune Defic Syndr, 71(3), 287-94.
Full-text Article: http://scholars.fhcrc.org/8867/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26866954/?otool=fhcrclib

Mugwanya KK,Wyatt C,Celum C,Donnell D,Kiarie J,Ronald A,Baeten JM. (2016). Reversibility of Glomerular Renal Function Decline in HIV-Uninfected Men and Women Discontinuing Emtricitabine-Tenofovir Disoproxil Fumarate Pre-Exposure Prophylaxis. J Acquir Immune Defic Syndr, 71(4), 374-80.
Full-text Article: http://scholars.fhcrc.org/8933/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26914909/?otool=fhcrclib

Neher RA,Bedford T,Daniels RS,Russell CA,Shraiman BI. (2016). Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses. Proc Natl Acad Sci U S A.
Full-text Article: http://scholars.fhcrc.org/9095/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26951657/?otool=fhcrclib

Peterson CW,Haworth KG,Burke BP,Polacino P,Norman KK,Adair JE,Hu SL,Bartlett JS,Symonds GP,Kiem HP. (2016). Multilineage polyclonal engraftment of Cal-1 gene-modified cells and in vivo selection after SHIV infection in a nonhuman primate model of AIDS. Mol Ther Methods Clin Dev, 3, 16007. PMCID: PMC4765711.
Full-text Article: http://scholars.fhcrc.org/9096/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26958575/?otool=fhcrclib

Peterson CW,Wang J,Norman KK,Norgaard ZK,Humbert O,Tse CK,Yan JJ,Trimble RG,Shivak DA,Rebar EJ,Gregory PD,Holmes MC,Kiem HP. (2016). Long-term multi-lineage engraftment of genome-edited hematopoietic stem cells after autologous transplantation in nonhuman primates. Blood.
Full-text Article: http://scholars.fhcrc.org/9174/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26980728/?otool=fhcrclib

Pettifor A,MacPhail C,Selin A,Gomez-Olive FX,Rosenberg M,Wagner RG,Mabuza W,Hughes JP,Suchindran C,Piwowar-Manning E,Wang J,Twine R,Daniel T,Andrew P,Laeyendecker O,Agyei Y,Tollman S,Kahn K. (2016). HPTN 068: A Randomized Control Trial of a Conditional Cash Transfer to Reduce HIV Infection in Young Women in South Africa-Study Design and Baseline Results. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8913/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26891839/?otool=fhcrclib

Roxby AC,Fredricks DN,Odem-Davis K,Asbjornsdottir K,Masese L,Fiedler TL,De Rosa S,Jaoko W,Kiarie JN,Overbaugh J,McClelland RS. (2016). Changes in Vaginal Microbiota and Immune Mediators in HIV-1-Seronegative Kenyan Women Initiating Depot Medroxyprogesterone Acetate. J Acquir Immune Defic Syndr, 71(4), 359-66.
Full-text Article: http://scholars.fhcrc.org/8935/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26914908/?otool=fhcrclib

Sivagnanam S,Pergam SA. (2016). Legionellosis in Transplantation. Curr Infect Dis Rep, 18(3), 9.
Full-text Article: http://scholars.fhcrc.org/8891/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26857395/?otool=fhcrclib

Strong RK,Finton KA. (2016). The Broadly Neutralizing, Anti-HIV Antibody 4E10: an Open and Shut Case?. J Virol, 90(6), 3274-5.
Full-text Article: http://scholars.fhcrc.org/8944/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26921372/?otool=fhcrclib

Teira P,Battiwalla M,Ramanathan M,Barrett AJ,Ahn KW,Chen M,Green JS,Saad A,Antin JH,Savani BN,Lazarus HM,Seftel M,Saber W,Marks D,Aljurf M,Norkin M,Wingard JR,Lindemans CA,Boeckh M,Riches ML,Auletta JJ. (2016). Early cytomegalovirus reactivation remains associated with increased transplant related mortality in the current era: a CIBMTR analysis. Blood.
Full-text Article: http://scholars.fhcrc.org/8901/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26884374/?otool=fhcrclib

Waghmare A,Englund JA,Boeckh M. (2016). How I treat respiratory viral infections in the setting of intensive chemotherapy or hematopoietic cell transplantation. Blood.
Full-text Article: http://scholars.fhcrc.org/9083/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26968533/?otool=fhcrclib

February

Baden LR, Karita E, Mutua G, Bekker LG, Gray G, Page-Shipp L, Walsh SR, Nyombayire J, Anzala O, Roux S, Laher F, Innes C, Seaman MS, Cohen YZ, Peter L, Frahm N, McElrath MJ, Hayes P, Swann E, Grunenberg N, Grazia-Pau M, Weijtens M, Sadoff J, Dally L, Lombardo A, Gilmour J, Cox J, Dolin R, Fast P, Barouch DH, Laufer DS. (2016). Assessment of the Safety and Immunogenicity of 2 Novel Vaccine Platforms for HIV-1 Prevention: A Randomized Trial. Ann Intern Med.
Full-text Article: http://scholars.fhcrc.org/8822/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26833336/?otool=fhcrclib

Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH. (2016). Automated analysis of flow cytometry data comes of age. Cytometry A, 89(1), 13-5.
Full-text Article: http://scholars.fhcrc.org/8807/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26812230/?otool=fhcrclib

Deschamps MM, Metch B, Morgan CA, Zorilla CD, Donastorg Y, Swann E, Taina D, Patrice J, Pape WJ. (2016). Feasibility of Identifying a Female Sex Worker Cohort at High Risk of HIV Infection in the Caribbean for HIV Vaccine Efficacy Trials: Longitudinal Results of HVTN 907. J Acquir Immune Defic Syndr, 71(1), 70-7. PMCID: PMC4712715.
Full-text Article: http://scholars.fhcrc.org/8724/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761272/?otool=fhcrclib

Dimitrov D, Kublin JG, Ramsey S, Corey L. (2015). Are Clade Specific HIV Vaccines a Necessity? An Analysis Based on Mathematical Models. EBioMedicine, 2(12), 2062-9. PMCID: PMC4703729.
Full-text Article: http://scholars.fhcrc.org/8829/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26844286/?otool=fhcrclib

Fleming TR, Ellenberg SS. (2016). Evaluating interventions for Ebola: The need for randomized trials. Clin Trials.
Full-text Article: http://scholars.fhcrc.org/8706/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26768563/?otool=fhcrclib

Hammer MJ, Melkus GDE, Knobf MT, Casper C, Fletcher J, Cleland CM. (2016). Glycemic Status and Infection Risk in Nondiabetic Autologous Hematopoietic Cell Transplantation Recipients. Biol Res Nurs.
Full-text Article: http://scholars.fhcrc.org/8778/ 
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26792914/?otool=fhcrclib

Huang Y, DiazGranados C, Janes H, Huang Y, deCamp AC, Metch B, Grant S, Sanchez B, Phogat S, Koutsoukos M, Kanesa-Thasan N, Bourguignon P, Collard A, Buchbinder S, Tomaras GD, McElrath J, Gray G, Kublin JG, Corey L, Gilbert PB. (2016). Selection of HIV vaccine candidates for concurrent testing in an efficacy trial. Curr Opin Virol, 17, 57-65.
Full-text Article: http://scholars.fhcrc.org/8820/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26827165/?otool=fhcrclib

Huang Y, Zhang L, Jolliffe D, Hovden AO, Okvist M, Pantaleo G, Sommerfelt MA. (2016). A case for preART-adjusted endpoints in HIV therapeutic vaccine trials. Vaccine.
Full-text Article: http://scholars.fhcrc.org/8798/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26826543/?otool=fhcrclib  

Jacobson JM, Zheng L, Wilson CC, Tebas P, Matining RM, Egan MA, Eldridge J, Landay AL, Clifford DB, Luetkemeyer AF, Tiu J, Martinez AL, Janik J, Spitz TA, Hural J, McElrath J, Frahm N. (2016). The Safety and Immunogenicity of an Interleukin-12-Enhanced Multiantigen DNA Vaccine Delivered by Electroporation for the Treatment of HIV-1 Infection. J Acquir Immune Defic Syndr, 71(2), 163-71. PMCID: PMC4712745.
Full-text Article: http://scholars.fhcrc.org/8708/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761518/?otool=fhcrclib  

Jing L, Laing KJ, Dong L, Russell RM, Barlow RS, Haas JG, Ramchandani MS, Johnston C, Buus S, Redwood AJ, White KD, Mallal SA, Phillips EJ, Posavad CM, Wald A, Koelle DM. (2016). Extensive CD4 and CD8 T Cell Cross-Reactivity between Alphaherpesviruses. J Immunol.
Full-text Article: http://scholars.fhcrc.org/8812/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26810224/?otool=fhcrclib  

Kyu HH, et al. (2016). Global and National Burden of Diseases and Injuries Among Children and Adolescents Between 1990 and 2013: Findings From the Global Burden of Disease 2013 Study. JAMA Pediatr.
Full-text Article: http://scholars.fhcrc.org/8801/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26810619/?otool=fhcrclib  

Lednicky JA, Iovine NM, Brew J, Loeb JC, Sugimoto JD, Rand KH, Morris JGJ. (2016). Hemagglutinin Gene Clade 3C.2a Influenza A(H3N2) Viruses, Alachua County, Florida, USA, 2014-15. Emerg Infect Dis, 22(1), 121-3. PMCID: PMC4696699.
Full-text Article: http://scholars.fhcrc.org/8774/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26692074/?otool=fhcrclib  

Lorenzo-Redondo R, Fryer HR, Bedford T, Kim EY, Archer J, Kosakovsky Pond SL, Chung YS, Penugonda S, Chipman JG, Fletcher CV, Schacker TW, Malim MH, Rambaut A, Haase AT, McLean AR, Wolinsky SM. (2016). Persistent HIV-1 replication maintains the tissue reservoir during therapy. Nature.
Full-text Article: http://scholars.fhcrc.org/8816/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26814962/?otool=fhcrclib  

Mather CA, Werth BJ, Sivagnanam S, SenGupta DJ, Butler-Wu SM. (2016). Rapid Detection of Vancomycin Intermediate Staphylococcus aureus (VISA) by Matrix Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS). J Clin Microbiol.
Full-text Article: http://scholars.fhcrc.org/8737/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26763961/?otool=fhcrclib  

Meyer AG, Spielman SJ, Bedford T, Wilke CO. (2015). Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak. Virus Evol, 1(1). PMCID: PMC4710376.
Full-text Article: http://scholars.fhcrc.org/8699/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26770819/?otool=fhcrclib  

Milligan C, Omenda MM, Chohan V, Odem-Davis K, Richardson BA, Nduati R, Overbaugh J. (2016). Maternal Neutralization-Resistant Virus Variants Do Not Predict Infant HIV Infection Risk. MBio, 7(1).
Full-text Article: http://scholars.fhcrc.org/8824/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26838723/?otool=fhcrclib  

Pergam SA. (2016). Infection Prevention in Transplantation. Curr Infect Dis Rep, 18(2), 7.
Full-text Article: http://scholars.fhcrc.org/8785/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26820654/?otool=fhcrclib  

Schiffer JT, Swan DA, Magaret A, Corey L, Wald A, Ossig J, Ruebsamen-Schaeff H, Stoelben S, Timmler B, Zimmermann H, Melhem MR, Van Wart SA, Rubino CM, Birkmann A. (2016). Mathematical modeling of herpes simplex virus-2 suppression with pritelivir predicts trial outcomes. Sci Transl Med, 8(324), 324ra15.
Full-text Article: http://scholars.fhcrc.org/8843/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26843190/?otool=fhcrclib  

Sedlak RH, Liang S,Niyonzima N, De Silva Feelixge HS, Roychoudhury P, Greninger AL, Weber ND, Boissel S, Scharenberg AM, Cheng A, Magaret A, Bumgarner R, Stone D, Jerome KR. (2016). Digital detection of endonuclease mediated gene disruption in the HIV provirus. Sci Rep, 6, 20064. PMCID: PMC4735761.
Full-text Article: http://scholars.fhcrc.org/8844/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26829887/?otool=fhcrclib  

Stachel D, Stevens-Ayers T, Boeckh M. (2015). In vitro studies of the impact of maribavir on CMV-specific cellular immune responses. J Clin Virol, 75, 53-59.
Full-text Article: http://scholars.fhcrc.org/8765/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26780109/?otool=fhcrclib  

Uy GL, et al. (2015). Contribution of chemotherapy mobilization to disease control in multiple myeloma treated with autologous hematopoietic cell transplantation. Bone Marrow Transplant, 50(12), 1513-8. PMCID: PMC4548821.
Full-text Article: http://scholars.fhcrc.org/8773/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26301967/?otool=fhcrclib  

van der Straten A, Brown ER, Marrazzo JM, Chirenje MZ, Liu K, Gomez K, Marzinke MA, Piper JM, Hendrix CW. (2016). Divergent adherence estimates with pharmacokinetic and behavioural measures in the MTN-003 (VOICE) study. J Int AIDS Soc, 19(1), 20642.
Full-text Article: http://scholars.fhcrc.org/8847/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26850270/?otool=fhcrclib  

van der Straten A, Panther L, Laborde N, Hoesley CJ, Cheng H, Husnik MJ, Horn S, Nel A, Soto-Torres L, Chen BA. (2016). Adherence and Acceptability of a Multidrug Vaginal Ring for HIV Prevention in a Phase I Study in the United States. AIDS Behav.
Full-text Article: http://scholars.fhcrc.org/8848/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26837628/?otool=fhcrclib   

Vigdorovich V, Strong RK, Miller AD. (2016). Correction for Vigdorovich et al., Expression and Characterization of a Soluble, Active Form of the Jaagsiekte Sheep Retrovirus Receptor, Hyal2. J Virol, 90(4), 2159.
Full-text Article: http://scholars.fhcrc.org/8818/   
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26822597/?otool=fhcrclib  

Xu DR, Gong W, Caine ED, Xiao S, Hughes JP, Ng M, Simoni J, He H, Smith KL, Brown HSr, Gloyd S. (2016). Lay health supporters aided by a mobile phone messaging system to improve care of villagers with schizophrenia in Liuyang, China: protocol for a randomised control trial. BMJ Open, 6(1), e010120.
Full-text Article: http://scholars.fhcrc.org/8776/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26792221/?otool=fhcrclib  

Zhou JC, Chu HT, Hudgens MG, Halloran ME. (2016). A Bayesian approach to estimating causal vaccine effects on binary post-infection outcomes. Statistics in Medicine, 35(1), 53-64.
Full-text Article: http://scholars.fhcrc.org/8826/  
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26194767/?otool=fhcrclib  

January

Bender Ignacio RA, Lee JY, Rudek MA, Dittmer DP, Ambinder RF, Krown SE, Team AMCA-S. (2015). A phase 1b/pharmacokinetic trial of PTC299, a novel post-transcriptional VEGF inhibitor, for AIDS-related Kaposi's sarcoma: AIDS Malignancy Consortium trial 059. Journal of acquired immune deficiency syndromes.
Full-text Article:  http://scholars.fhcrc.org/8610/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26689971?otool=fhcrclib

Cheng G-S, Campbell AP, Xie H, Stednick Z, Callais C, Leisenring WM, Englund JA, Chien JW, Boeckh M. (2015). Correlation and Agreement of Handheld Spirometry with Laboratory Spirometry in Allogeneic Hematopoietic Cell Transplant Recipients. Biol Blood Marrow Transplant.
Full-text Article:  http://scholars.fhcrc.org/8669/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26748162?otool=fhcrclib

De Silva Feelixge HS, Stone D, Pietz HL, Roychoudhury P, Greninger AL, Schiffer JT, Aubert M, Jerome KR. (2016). Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy. Antiviral Res, 126, 90-8.
Full-text Article:  http://scholars.fhcrc.org/8656/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26718067?otool=fhcrclib

Deschamps MM, Metch B, Morgan CA, Zorilla CD, Donastorg Y, Swann E, Taina D, Patrice J, Pape WJ, Team HS. (2016). Feasibility of Identifying a Female Sex Worker Cohort at High Risk of HIV Infection in the Caribbean for HIV Vaccine Efficacy Trials: Longitudinal Results of HVTN 907. Journal of acquired immune deficiency syndromes, 71(1), 70-7.
Full-text Article:  http://scholars.fhcrc.org/8693/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26761272?otool=fhcrclib

Fife KH, Mugwanya K, Thomas KK, Baeten JM, Celum C, Bukusi E, de Bruyn G, Mujugira A, Vwalika B, Wald A, Lingappa JR. (2015). Transient Increase in HSV-2-Associated Genital Ulcers Following Initiation of Antiretroviral Therapy in HIV-1/HSV-2 Co-Infected Individuals. J Infect Dis.
Full-text Article:  http://scholars.fhcrc.org/8606/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26704611?otool=fhcrclib

Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M, Linsley PS, Gottardo R. (2015). MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data. Genome Biol, 16, 278. PMCID: PMC4676162.
Full-text Article:  http://scholars.fhcrc.org/8595/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26653891?otool=fhcrclib

Gilbert PB, Gabriel EE, Huang Y, Chan ISF. (2015). Surrogate Endpoint Evaluation: Principal Stratification Criteria and the Prentice Definition. J Causal Inference, 3(2), 157-75. PMCID: PMC4692254.
Full-text Article:  http://scholars.fhcrc.org/8638/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26722639?otool=fhcrclib

Gilbert PB, Gabriel EE, Hudgens MG, Miao X, Li X, Su S-C, Parrino J, Chan ISF. (2015). Reply to Dunning. J Infect Dis, 212(9), 1521-3. PMCID: PMC4612359.
Full-text Article:  http://scholars.fhcrc.org/8567/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/25985906?otool=fhcrclib

Pattacini L, Baeten JM, Thomas KK, Fluharty TR, Murnane PM, Donnell D, Bukusi E, Ronald A, Mugo N, Lingappa JR, Celum C, McElrath MJ, Lund JM. (2015). Regulatory T-cell activity but not conventional HIV-specific T-cell responses are associated with protection from HIV-1 infection. Journal of acquired immune deficiency syndromes.
Full-text Article:  http://scholars.fhcrc.org/8591/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26656786?otool=fhcrclib

Polyak CS, Yuhas K, Singa B, Khaemba M, Walson J, Richardson BA, John-Stewart G. (2016). Cotrimoxazole Prophylaxis Discontinuation among Antiretroviral-Treated HIV-1-Infected Adults in Kenya: A Randomized Non-inferiority Trial. PLoS Med, 13(1), e1001934.
Full-text Article:  http://scholars.fhcrc.org/8672/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26731191?otool=fhcrclib

Robertson K, Jiang H, Evans SR, Marra CM, Berzins B, Hakim J, Sacktor N, Silva MT, Campbell TB, Nair A, Schouten JT, Kumwenda J, Supparatpinyo K, Tripathy S, Kumarasamy N, la Rosa A, Montano S, Mwafongo A, Firnhaber C, Sanne I, Naini L, Amod F, Walawander A, Group ACT. (2016). International neurocognitive normative study: neurocognitive comparison data in diverse resource-limited settings: AIDS Clinical Trials Group A5271. J Neurovirol.
Full-text Article:  http://scholars.fhcrc.org/8688/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26733457?otool=fhcrclib

Ruel-Bergeron JC, Stevens GA, Sugimoto JD, Roos FF, Ezzati M, Black RE, Kraemer K. (2015). Global Update and Trends of Hidden Hunger, 1995-2011: The Hidden Hunger Index. PLoS One, 10(12), e0143497.
Full-text Article:  http://scholars.fhcrc.org/8579/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26673631?otool=fhcrclib

Weis JF, Baeten JM, McCoy CO, Warth C, Donnell D, Thomas KK, Hendrix CW, Marzinke MA, Mugo N, Iv FAM, Celum C, Lehman DA. (2016). Preexposure prophylaxis-selected drug resistance decays rapidly after drug cessation. Aids, 30(1), 31-5. PMCID: PMC4704103.
Full-text Article:  http://scholars.fhcrc.org/8666/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26731753?otool=fhcrclib

Williams KM, Ahn KW, Chen M, Aljurf MD, Agwu AL, Chen AR, Walsh TJ, Szabolcs P, Boeckh MJ, Auletta JJ, Lindemans CA, Zanis-Neto J, Malvezzi M, Lister J, de Toledo Codina JS, Sackey K, Chakrabarty JL, Ljungman P, Wingard JR, Seftel MD, Seo S, Hale GA, Wirk B, Smith MS, Savani BN, Lazarus HM, Marks DI, Ustun C, Abdel-Azim H, Dvorak CC, Szer J, Storek J, Yong A, Riches MR. (2016). The incidence, mortality and timing of Pneumocystis jiroveci pneumonia after hematopoietic cell transplantation: a CIBMTR analysis. Bone Marrow Transplant.
Full-text Article:  http://scholars.fhcrc.org/8675/
PubMed Record: http://www.ncbi.nlm.nih.gov/pubmed/26726945?otool=fhcrclib


How to reach VIDD News:
viddnews@fhcrc.org